Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001341A_C01 KMC001341A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188492.2| hypothetical protein; protein id: At3g18620.1, ... 150 7e-36
ref|NP_699927.1| sugar ABC transporter, permease protein, putati... 35 0.46
ref|NP_541519.1| SUGAR TRANSPORT SYSTEM PERMEASE PROTEIN [Brucel... 35 0.46
dbj|BAA98001.1| hemagglutinin-esterase precursor [Influenza C vi... 34 1.3
ref|XP_194901.1| similar to hypothetical protein Y39B6B.gg [impo... 33 1.7
>ref|NP_188492.2| hypothetical protein; protein id: At3g18620.1, supported by cDNA:
gi_19424024, supported by cDNA: gi_21281222 [Arabidopsis
thaliana] gi|9294323|dbj|BAB02220.1|
gene_id:K24M9.11~unknown protein [Arabidopsis thaliana]
gi|19424025|gb|AAL87266.1| unknown protein [Arabidopsis
thaliana] gi|21281223|gb|AAM45051.1| unknown protein
[Arabidopsis thaliana]
Length = 345
Score = 150 bits (380), Expect = 7e-36
Identities = 78/156 (50%), Positives = 103/156 (66%), Gaps = 6/156 (3%)
Frame = -1
Query: 549 NHRSFIAFLISAVLSTIYVSVMAAYSSMHIWPPLNYS------VGHINGASSADRAWRFM 388
NH+ FIAFLISAV+ST Y +VM Y+ +HI PP+ V H+ +S R +
Sbjct: 189 NHKYFIAFLISAVISTSYAAVMCVYTLIHILPPIEKGAAYASDVAHVAHGNSIS-ILRVV 247
Query: 387 SEIIAAFLRSALFLSSRGLVLAYLLIASVSLQIGLSILLWQQLSYIYQGKTYLSHLSSPG 208
I ++ +A+F+S R LVL YL +ASVS+ IGLS+LLWQQLSYIY+GKTYLSHLSS G
Sbjct: 248 KNICLTYIANAVFISVRSLVLVYLFVASVSVAIGLSVLLWQQLSYIYEGKTYLSHLSSQG 307
Query: 207 DNDEEKKDCQNLVRFFGFQYPVTRFLPNFRATPKRH 100
++ +K C+NL+ FFG + + R LP R KRH
Sbjct: 308 TEEDGEKSCRNLLTFFGCPHSIERHLPTIRNLRKRH 343
>ref|NP_699927.1| sugar ABC transporter, permease protein, putative [Brucella suis
1330] gi|23464116|gb|AAN33932.1|AE014570_10 sugar ABC
transporter, permease protein, putative [Brucella suis
1330]
Length = 275
Score = 35.4 bits (80), Expect = 0.46
Identities = 26/93 (27%), Positives = 51/93 (53%), Gaps = 4/93 (4%)
Frame = -1
Query: 519 SAVLSTIYVSVMAAYSSMHIWPPLNYSVGHIN-GASSADRAWRFMSEIIAAF-LRSALF- 349
+A+L++IYVSV+A+ ++ I P Y++ A A R + +S++I+ L LF
Sbjct: 67 NALLNSIYVSVIASVGAIIISIPAAYAMSRFRFAAHGAFRQFLLVSQMISPIVLVLGLFR 126
Query: 348 -LSSRGLVLAYLLIASVSLQIGLSILLWQQLSY 253
L++ GL+ + + +V + ++ +W SY
Sbjct: 127 LLAAYGLIESVSAVGAVYMAFNIAFTVWMLQSY 159
>ref|NP_541519.1| SUGAR TRANSPORT SYSTEM PERMEASE PROTEIN [Brucella melitensis]
gi|25297994|pir||AD3577 sugar transport system permease
protein [imported] - Brucella melitensis (strain 16M)
gi|17984712|gb|AAL53783.1| SUGAR TRANSPORT SYSTEM
PERMEASE PROTEIN [Brucella melitensis 16M]
Length = 295
Score = 35.4 bits (80), Expect = 0.46
Identities = 26/93 (27%), Positives = 51/93 (53%), Gaps = 4/93 (4%)
Frame = -1
Query: 519 SAVLSTIYVSVMAAYSSMHIWPPLNYSVGHIN-GASSADRAWRFMSEIIAAF-LRSALF- 349
+A+L++IYVSV+A+ ++ I P Y++ A A R + +S++I+ L LF
Sbjct: 87 NALLNSIYVSVIASVGAIIISIPAAYAMSRFRFAAHGAFRQFLLVSQMISPIVLVLGLFR 146
Query: 348 -LSSRGLVLAYLLIASVSLQIGLSILLWQQLSY 253
L++ GL+ + + +V + ++ +W SY
Sbjct: 147 LLAAYGLIESVSAVGAVYMAFNIAFTVWMLQSY 179
>dbj|BAA98001.1| hemagglutinin-esterase precursor [Influenza C virus]
Length = 645
Score = 33.9 bits (76), Expect = 1.3
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = -1
Query: 363 RSALFLSSRGLVLAYLLIASVSLQIGLSILLWQQLSYIYQGKTYLSHLSSPG----DNDE 196
RS FL G++ A LL+ ++S IGL LW+ S I L+ SPG DN+
Sbjct: 524 RSEAFLGELGIIRA-LLVGNIS--IGLQESLWELASEITNRAGDLAVEISPGCWIIDNNI 580
Query: 195 EKKDCQNLVRFFGFQYPVTRFLP 127
+ CQN + F PV P
Sbjct: 581 CDQSCQNFIFKFNETAPVPTIPP 603
>ref|XP_194901.1| similar to hypothetical protein Y39B6B.gg [imported] -
Caenorhabditis elegans [Mus musculus]
Length = 293
Score = 33.5 bits (75), Expect = 1.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 535 HCLPHFSSVEHNLCLRHGCIFKHAH 461
H + H SV+H LC++HG KH H
Sbjct: 159 HSVKHGLSVKHGLCVKHGLCVKHGH 183
Score = 32.3 bits (72), Expect = 3.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 535 HCLPHFSSVEHNLCLRHGCIFKHAH 461
H + H SV+H C++HG KH H
Sbjct: 183 HSVKHGHSVKHGFCVKHGLCVKHGH 207
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,607,666
Number of Sequences: 1393205
Number of extensions: 8578109
Number of successful extensions: 20312
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 19806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20310
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
