Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001334A_C01 KMC001334A_c01
(657 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO72382.1| putative vacuolar protein sorting-associated prot... 69 4e-11
pir||G96787 protein T4O12.9 [imported] - Arabidopsis thaliana gi... 64 1e-09
ref|NP_177713.1| vacuolor sorting protein 35, putative; protein ... 64 1e-09
ref|NP_179370.1| putative vacuolar sorting protein 35; protein i... 56 5e-07
pir||T08858 vacuolar protein-sorting protein homolog A_TM017A05.... 56 5e-07
>gb|AAO72382.1| putative vacuolar protein sorting-associated protein [Oryza sativa
(japonica cultivar-group)]
Length = 793
Score = 69.3 bits (168), Expect = 4e-11
Identities = 32/52 (61%), Positives = 40/52 (76%)
Frame = -2
Query: 644 IQGLIELIMNEMPSDTTTPDPAADAFLASTMRFIQFQKPKGGTVGEKYEPIK 489
IQ LIELI E S+ T DP+ +AF AST+R+I+FQK KGG++GEKYE IK
Sbjct: 740 IQDLIELIRTEKQSENTVADPSTEAFFASTLRYIEFQKQKGGSIGEKYEQIK 791
>pir||G96787 protein T4O12.9 [imported] - Arabidopsis thaliana
gi|8778819|gb|AAF26771.2|AC007396_20 T4O12.9
[Arabidopsis thaliana]
Length = 884
Score = 64.3 bits (155), Expect = 1e-09
Identities = 32/57 (56%), Positives = 40/57 (70%)
Frame = -2
Query: 656 TLADIQGLIELIMNEMPSDTTTPDPAADAFLASTMRFIQFQKPKGGTVGEKYEPIKV 486
T +DIQ LIELI NEM SD +D F ST+R+I+F K KGG +GEKY+PIK+
Sbjct: 828 TPSDIQSLIELINNEMQSDNGNTTIHSDPFFTSTLRYIKFIKQKGGLMGEKYDPIKL 884
>ref|NP_177713.1| vacuolor sorting protein 35, putative; protein id: At1g75850.1
[Arabidopsis thaliana]
Length = 838
Score = 64.3 bits (155), Expect = 1e-09
Identities = 32/57 (56%), Positives = 40/57 (70%)
Frame = -2
Query: 656 TLADIQGLIELIMNEMPSDTTTPDPAADAFLASTMRFIQFQKPKGGTVGEKYEPIKV 486
T +DIQ LIELI NEM SD +D F ST+R+I+F K KGG +GEKY+PIK+
Sbjct: 782 TPSDIQSLIELINNEMQSDNGNTTIHSDPFFTSTLRYIKFIKQKGGLMGEKYDPIKL 838
>ref|NP_179370.1| putative vacuolar sorting protein 35; protein id: At2g17790.1
[Arabidopsis thaliana] gi|25336361|pir||E84556 probable
vacuolar sorting-associated protein [imported] -
Arabidopsis thaliana
Length = 830
Score = 55.8 bits (133), Expect = 5e-07
Identities = 28/59 (47%), Positives = 42/59 (70%), Gaps = 2/59 (3%)
Frame = -2
Query: 656 TLADIQGLIELIMNE--MPSDTTTPDPAADAFLASTMRFIQFQKPKGGTVGEKYEPIKV 486
T+ ++ LI+LI NE MPSD P+A++F A+T+ F++FQK K G +GE+Y+ IKV
Sbjct: 777 TVESVESLIKLIKNEESMPSD-----PSAESFFATTLEFMEFQKQKEGAIGERYQAIKV 830
>pir||T08858 vacuolar protein-sorting protein homolog A_TM017A05.7 - Arabidopsis
thaliana
Length = 848
Score = 55.8 bits (133), Expect = 5e-07
Identities = 28/59 (47%), Positives = 42/59 (70%), Gaps = 2/59 (3%)
Frame = -2
Query: 656 TLADIQGLIELIMNE--MPSDTTTPDPAADAFLASTMRFIQFQKPKGGTVGEKYEPIKV 486
T+ ++ LI+LI NE MPSD P+A++F A+T+ F++FQK K G +GE+Y+ IKV
Sbjct: 795 TVESVESLIKLIKNEESMPSD-----PSAESFFATTLEFMEFQKQKEGAIGERYQAIKV 848
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 558,987,079
Number of Sequences: 1393205
Number of extensions: 11860026
Number of successful extensions: 26739
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 26144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26734
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
