Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001333A_C01 KMC001333A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567317.2| score=37.6, E=2.9e-07, N=3; protein id: At4g074... 142 3e-33
pir||C85072 hypothetical protein AT4g07410 [imported] - Arabidop... 142 3e-33
ref|NP_174067.2| hypothetical protein; protein id: At1g27470.1, ... 127 1e-28
pir||H86399 protein F17L21.26 [imported] - Arabidopsis thaliana ... 72 5e-12
gb|AAH00167.1|AAH00167 Unknown (protein for IMAGE:2900671) [Homo... 35 0.56
>ref|NP_567317.2| score=37.6, E=2.9e-07, N=3; protein id: At4g07410.1, supported by
cDNA: gi_19347783 [Arabidopsis thaliana]
gi|19347784|gb|AAL86343.1| unknown protein [Arabidopsis
thaliana] gi|22136758|gb|AAM91698.1| unknown protein
[Arabidopsis thaliana]
Length = 815
Score = 142 bits (358), Expect = 3e-33
Identities = 75/155 (48%), Positives = 103/155 (66%), Gaps = 22/155 (14%)
Frame = -3
Query: 599 QLGEWSMRNTFVLPRRYQEFPGEVIGLSFPPSETLTAV-VYSSRAMCFIDFKLPVEQDDS 423
QLG+WS+ NT+VLP+RYQEFPGEV+GLSF PS ++V VYSSRA C IDF PVE+D+
Sbjct: 662 QLGKWSLLNTYVLPKRYQEFPGEVLGLSFSPSPNSSSVIVYSSRAKCLIDFGKPVEEDE- 720
Query: 422 EMLLTQDSVGRNIQ----NLNVKK-----------------RTKYRKNFEVVPLENPVLF 306
E L ++ + ++ NL +KK ++ RKNFE++P +PVLF
Sbjct: 721 EYDLPNGNLSKTLEGKLVNLGLKKGKGTNRKRRLDEYQLEGKSNERKNFEILPSNHPVLF 780
Query: 305 LTHIKNNSFFMIDKPWLEVVKSLEASPVHRHIFGS 201
+ H+ NS +I+KPW++VVKSL+ PV RHIFG+
Sbjct: 781 VGHLSKNSILVIEKPWMDVVKSLDNQPVDRHIFGT 815
>pir||C85072 hypothetical protein AT4g07410 [imported] - Arabidopsis thaliana
gi|5732049|gb|AAD48948.1|AF147262_11 contains similarity
to Pfam family PF00400 -WD domain, G-beta repeat;
score=37.6, E=2.9e-07, N=3 [Arabidopsis thaliana]
gi|7267337|emb|CAB81111.1| contains similarity to Pfam
family PF00400 -WD domain, G-beta repeat, score=37.6,
E=2.9e-07, N=3~similarity to~contains EST gb:AI998167.1
[Arabidopsis thaliana]
Length = 728
Score = 142 bits (358), Expect = 3e-33
Identities = 75/155 (48%), Positives = 103/155 (66%), Gaps = 22/155 (14%)
Frame = -3
Query: 599 QLGEWSMRNTFVLPRRYQEFPGEVIGLSFPPSETLTAV-VYSSRAMCFIDFKLPVEQDDS 423
QLG+WS+ NT+VLP+RYQEFPGEV+GLSF PS ++V VYSSRA C IDF PVE+D+
Sbjct: 575 QLGKWSLLNTYVLPKRYQEFPGEVLGLSFSPSPNSSSVIVYSSRAKCLIDFGKPVEEDE- 633
Query: 422 EMLLTQDSVGRNIQ----NLNVKK-----------------RTKYRKNFEVVPLENPVLF 306
E L ++ + ++ NL +KK ++ RKNFE++P +PVLF
Sbjct: 634 EYDLPNGNLSKTLEGKLVNLGLKKGKGTNRKRRLDEYQLEGKSNERKNFEILPSNHPVLF 693
Query: 305 LTHIKNNSFFMIDKPWLEVVKSLEASPVHRHIFGS 201
+ H+ NS +I+KPW++VVKSL+ PV RHIFG+
Sbjct: 694 VGHLSKNSILVIEKPWMDVVKSLDNQPVDRHIFGT 728
>ref|NP_174067.2| hypothetical protein; protein id: At1g27470.1, supported by cDNA:
gi_17979116 [Arabidopsis thaliana]
gi|17979117|gb|AAL49816.1| unknown protein [Arabidopsis
thaliana] gi|23297582|gb|AAN12900.1| unknown protein
[Arabidopsis thaliana]
Length = 810
Score = 127 bits (318), Expect = 1e-28
Identities = 62/152 (40%), Positives = 92/152 (59%), Gaps = 19/152 (12%)
Frame = -3
Query: 599 QLGEWSMRNTFVLPRRYQEFPGEVIGLSFPPSETLTAVV-YSSRAMCFIDFKLPVEQDDS 423
+L +WS+ TF LP+ YQ FPGEV+GLSF PS ++V+ YSSRA C I+F P EQD+
Sbjct: 659 ELSKWSLLQTFCLPKSYQNFPGEVVGLSFSPSPCSSSVIIYSSRAKCLIEFGKPAEQDED 718
Query: 422 ------------------EMLLTQDSVGRNIQNLNVKKRTKYRKNFEVVPLENPVLFLTH 297
M L + R ++ + ++ RK FE+V ++PVL+L H
Sbjct: 719 TDTPCNLSEKLEGKLASISMKLGNGAQKRRLEEYQKESKSNKRKKFEMVTSKHPVLYLRH 778
Query: 296 IKNNSFFMIDKPWLEVVKSLEASPVHRHIFGS 201
+ ++ +I+KPW+EV+K+L+ PVHRHIFG+
Sbjct: 779 LSKSAILVIEKPWMEVIKNLDTQPVHRHIFGT 810
>pir||H86399 protein F17L21.26 [imported] - Arabidopsis thaliana
gi|9802540|gb|AAF99742.1|AC004557_21 F17L21.26
[Arabidopsis thaliana]
Length = 1034
Score = 72.0 bits (175), Expect = 5e-12
Identities = 32/59 (54%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Frame = -3
Query: 599 QLGEWSMRNTFVLPRRYQEFPGEVIGLSFPPSE-TLTAVVYSSRAMCFIDFKLPVEQDD 426
+L +WS+ TF LP+ YQ FPGEV+GLSF PS + + ++YSSRA C I+F P EQD+
Sbjct: 618 ELSKWSLLQTFCLPKSYQNFPGEVVGLSFSPSPCSSSVIIYSSRAKCLIEFGKPAEQDE 676
>gb|AAH00167.1|AAH00167 Unknown (protein for IMAGE:2900671) [Homo sapiens]
Length = 533
Score = 35.4 bits (80), Expect = 0.56
Identities = 23/107 (21%), Positives = 53/107 (49%)
Frame = -3
Query: 521 LSFPPSETLTAVVYSSRAMCFIDFKLPVEQDDSEMLLTQDSVGRNIQNLNVKKRTKYRKN 342
+SF P + +++ + C ID LP+ D + LL N ++ +++RT +
Sbjct: 433 ISFHPKRPMHILLHDAYMFCIIDKSLPLPND--KTLLYNPFPPTNESDV-IRRRTAHA-- 487
Query: 341 FEVVPLENPVLFLTHIKNNSFFMIDKPWLEVVKSLEASPVHRHIFGS 201
F++ + P+LF+ + + +++P +++ L P+ + FG+
Sbjct: 488 FKISKIYKPLLFMDLLDERTLVAVERPLDDIIAQL-PPPIKKKKFGT 533
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,146,131
Number of Sequences: 1393205
Number of extensions: 11986143
Number of successful extensions: 26400
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26382
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
