Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001331A_C01 KMC001331A_c01
(432 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_079875.1| RIKEN cDNA 2610528E23; RIKEN cDNA 4930572F24 ge... 30 5.3
dbj|BAB28074.1| unnamed protein product [Mus musculus] gi|244335... 30 5.3
ref|XP_148465.1| expressed sequence AV122629 [Mus musculus] 30 5.3
gb|AAM48160.1|AF511116_1 WaaL [Salmonella enterica subsp. arizonae] 27 7.7
ref|NP_693213.1| hypothetical protein [Oceanobacillus iheyensis ... 30 9.0
>ref|NP_079875.1| RIKEN cDNA 2610528E23; RIKEN cDNA 4930572F24 gene [Mus musculus]
gi|12860412|dbj|BAB31948.1| unnamed protein product [Mus
musculus]
Length = 276
Score = 30.4 bits (67), Expect = 5.3
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 249 IILDNSGIALSLDMH*LTPMKGLSKVFAIF*NHIKIRTDVFIILQRIIEYDFG 407
+IL +S + + LT KG +KV +F HIK++ V ++ +R+I G
Sbjct: 156 LILCSSAVRALELIRSLTAFKGDAKVMKLFAKHIKVQEQVKLLEKRVIHLGVG 208
>dbj|BAB28074.1| unnamed protein product [Mus musculus] gi|24433544|gb|AAH38891.1|
similar to RIKEN cDNA 2610528E23 gene [Mus musculus]
Length = 276
Score = 30.4 bits (67), Expect = 5.3
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 249 IILDNSGIALSLDMH*LTPMKGLSKVFAIF*NHIKIRTDVFIILQRIIEYDFG 407
+IL +S + + LT KG +KV +F HIK++ V ++ +R+I G
Sbjct: 156 LILCSSAVRALELIRSLTAFKGDAKVMKLFAKHIKVQEQVKLLEKRVIHLGVG 208
>ref|XP_148465.1| expressed sequence AV122629 [Mus musculus]
Length = 244
Score = 30.4 bits (67), Expect = 5.3
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 249 IILDNSGIALSLDMH*LTPMKGLSKVFAIF*NHIKIRTDVFIILQRIIEYDFG 407
+IL +S + + LT KG +KV +F HIK++ V ++ +R+I G
Sbjct: 124 LILCSSAVRALELIRSLTAFKGDAKVMKLFAKHIKVQEQVKLLEKRVIHLGVG 176
>gb|AAM48160.1|AF511116_1 WaaL [Salmonella enterica subsp. arizonae]
Length = 403
Score = 26.6 bits (57), Expect(2) = 7.7
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +2
Query: 74 SLRCSSHYLNPSWHSVALFLFCALTFYSIMNKIKRYIIQKNIIR--HRASF*P-NFIYKL 244
SL + P+W+ +FLF A F + + K I+ II ++ S P NF +
Sbjct: 5 SLTLNKEKWKPTWNKALVFLFVATYFLDGITRYKHLIVILMIITAIYQVSRSPKNFSHLF 64
Query: 245 KNN 253
KN+
Sbjct: 65 KNS 67
Score = 21.9 bits (45), Expect(2) = 7.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 379 FKEL*NMILEGFL 417
FKE N +LEGFL
Sbjct: 93 FKEFENTVLEGFL 105
>ref|NP_693213.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
gi|22777977|dbj|BAC14248.1| hypothetical conserved
protein [Oceanobacillus iheyensis]
Length = 771
Score = 29.6 bits (65), Expect = 9.0
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 416 RKPSKIIFYNSLKNDKDISSYLNMVLKDCKHFAQSLHWCQLVHVKRQCNT 267
+K + + F+ S++ KDI SYL+ + KD F +L+ K + NT
Sbjct: 326 QKENAVKFFTSIQFMKDIQSYLSFINKDGLQFRHIRFRNELLISKEEINT 375
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 314,935,936
Number of Sequences: 1393205
Number of extensions: 5743004
Number of successful extensions: 11402
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11401
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 6789548448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
