Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001309A_C01 KMC001309A_c01
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193001.1| RRM-containing protein; protein id: At4g12640.1... 41 0.015
ref|NP_704016.1| origin recognition complex subunit, putative [P... 32 5.2
>ref|NP_193001.1| RRM-containing protein; protein id: At4g12640.1 [Arabidopsis
thaliana] gi|25407527|pir||G85135 hypothetical protein
AT4g12640 [imported] - Arabidopsis thaliana
gi|5823575|emb|CAB53757.1| putative protein [Arabidopsis
thaliana] gi|7267966|emb|CAB78307.1| putative protein
[Arabidopsis thaliana]
Length = 695
Score = 40.8 bits (94), Expect = 0.015
Identities = 27/78 (34%), Positives = 39/78 (49%), Gaps = 3/78 (3%)
Frame = -2
Query: 623 QRYAAENNLVNSEFS---APQLSQLLQSQMSNVALPPQTVQREPQSEVNGNQQFRDSGSL 453
+RYA E S P + QL+ Q NV + Q++ ++E N ++ L
Sbjct: 622 ERYAPEGRASFSHLQHAQTPSIPQLVTPQNQNVQIQSSNSQQQEETEANPQKR------L 675
Query: 452 QATLQLASALLHQLPAGK 399
QATLQLA+ALL Q+ K
Sbjct: 676 QATLQLAAALLQQIQQAK 693
>ref|NP_704016.1| origin recognition complex subunit, putative [Plasmodium falciparum
3D7] gi|23498754|emb|CAD50824.1| origin recognition
complex subunit, putative [Plasmodium falciparum 3D7]
Length = 825
Score = 32.3 bits (72), Expect = 5.2
Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = -3
Query: 589 LNFQRLSLVNFYSHRCQTWL-YRHK 518
+NF+ +S +NF+ +C TWL YRH+
Sbjct: 679 MNFKNISSINFFYIKCHTWLDYRHE 703
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,876,933
Number of Sequences: 1393205
Number of extensions: 9434979
Number of successful extensions: 21384
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21370
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
