Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001296A_C01 KMC001296A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06461 DNA-binding protein PD3, chloroplast - garden pea gi... 180 7e-45
pir||T10955 early nodulin binding protein 1 - spring vetch gi|13... 176 1e-43
pir||T43213 ENBP1 protein - barrel medic gi|3492803|emb|CAA05489... 169 2e-41
ref|NP_192008.2| putative protein (fragment); protein id: At4g00... 167 5e-41
gb|AAL60025.1| unknown protein [Arabidopsis thaliana] gi|2046574... 167 5e-41
>pir||T06461 DNA-binding protein PD3, chloroplast - garden pea
gi|2213540|emb|CAA67296.1| chloroplast DNA-binding
protein PD3 [Pisum sativum]
Length = 1629
Score = 180 bits (457), Expect = 7e-45
Identities = 84/106 (79%), Positives = 93/106 (87%)
Frame = -2
Query: 516 FLNERHKKQLKREFHIEPWTFEQHLGEAVFIPXGCPHQVRNRPSCIKVALDFVSPENVEE 337
+LNE+HKKQLK E+ +EPWTFEQHLGEAVFIP GCPHQVRNR SCIKVA+DFVSPENV+E
Sbjct: 1524 YLNEKHKKQLKLEYGVEPWTFEQHLGEAVFIPAGCPHQVRNRKSCIKVAMDFVSPENVQE 1583
Query: 336 CLQLTGEFRLLPKNHRAKEDKLEVKKMTLYAVSKAVREVKELMMAK 199
C+QLT EFRLLPKNHR+KEDKLE+KKM LYA AV E ELM AK
Sbjct: 1584 CVQLTEEFRLLPKNHRSKEDKLEIKKMALYAADVAVAEANELMGAK 1629
>pir||T10955 early nodulin binding protein 1 - spring vetch
gi|1360637|emb|CAA65242.1| ENBP1 [Vicia sativa]
Length = 1641
Score = 176 bits (447), Expect = 1e-43
Identities = 82/106 (77%), Positives = 92/106 (86%)
Frame = -2
Query: 516 FLNERHKKQLKREFHIEPWTFEQHLGEAVFIPXGCPHQVRNRPSCIKVALDFVSPENVEE 337
+LNE+HKKQLK E+ +EPWTFEQHLGEAVFIP GCPHQVRNR SCIKVA+DFVSPENV E
Sbjct: 1536 YLNEKHKKQLKIEYGVEPWTFEQHLGEAVFIPAGCPHQVRNRKSCIKVAMDFVSPENVRE 1595
Query: 336 CLQLTGEFRLLPKNHRAKEDKLEVKKMTLYAVSKAVREVKELMMAK 199
C+QLT EFRLLPKNHR+KEDKLE+KKM LYA AV E +L+ AK
Sbjct: 1596 CVQLTEEFRLLPKNHRSKEDKLEIKKMALYAADVAVAEANKLLGAK 1641
>pir||T43213 ENBP1 protein - barrel medic gi|3492803|emb|CAA05489.1| ENBP1
[Medicago truncatula]
Length = 1701
Score = 169 bits (428), Expect = 2e-41
Identities = 78/106 (73%), Positives = 90/106 (84%)
Frame = -2
Query: 516 FLNERHKKQLKREFHIEPWTFEQHLGEAVFIPXGCPHQVRNRPSCIKVALDFVSPENVEE 337
+LNE+HKKQLK E+ +EPWTFEQHLGEAVFIP GCPHQVRNR CIKVA+DFVSPENV E
Sbjct: 1596 YLNEKHKKQLKLEYGVEPWTFEQHLGEAVFIPAGCPHQVRNRKPCIKVAMDFVSPENVNE 1655
Query: 336 CLQLTGEFRLLPKNHRAKEDKLEVKKMTLYAVSKAVREVKELMMAK 199
C++LT EFRLLPK HR+KEDKLE+KKM LYA A+ E +L+ AK
Sbjct: 1656 CVRLTEEFRLLPKYHRSKEDKLEIKKMALYAADVAIAEATKLVGAK 1701
>ref|NP_192008.2| putative protein (fragment); protein id: At4g00990.1, supported by
cDNA: gi_18176334 [Arabidopsis thaliana]
Length = 454
Score = 167 bits (424), Expect = 5e-41
Identities = 79/105 (75%), Positives = 90/105 (85%)
Frame = -2
Query: 516 FLNERHKKQLKREFHIEPWTFEQHLGEAVFIPXGCPHQVRNRPSCIKVALDFVSPENVEE 337
FL++ KKQLK EF IEPWTFEQHLGEAVFIP GCPHQVRNR SCIKVALDFV+PE+VEE
Sbjct: 344 FLSDSQKKQLKEEFDIEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVAPESVEE 403
Query: 336 CLQLTGEFRLLPKNHRAKEDKLEVKKMTLYAVSKAVREVKELMMA 202
CL+LT EFR LPK+H + EDKLE+KK+ LYA S A+REVK LM +
Sbjct: 404 CLRLTQEFRRLPKDHSSSEDKLELKKIALYAASSAIREVKGLMQS 448
>gb|AAL60025.1| unknown protein [Arabidopsis thaliana] gi|20465747|gb|AAM20342.1|
unknown protein [Arabidopsis thaliana]
Length = 840
Score = 167 bits (424), Expect = 5e-41
Identities = 79/105 (75%), Positives = 90/105 (85%)
Frame = -2
Query: 516 FLNERHKKQLKREFHIEPWTFEQHLGEAVFIPXGCPHQVRNRPSCIKVALDFVSPENVEE 337
FL++ KKQLK EF IEPWTFEQHLGEAVFIP GCPHQVRNR SCIKVALDFV+PE+VEE
Sbjct: 730 FLSDSQKKQLKEEFDIEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVAPESVEE 789
Query: 336 CLQLTGEFRLLPKNHRAKEDKLEVKKMTLYAVSKAVREVKELMMA 202
CL+LT EFR LPK+H + EDKLE+KK+ LYA S A+REVK LM +
Sbjct: 790 CLRLTQEFRRLPKDHSSSEDKLELKKIALYAASSAIREVKGLMQS 834
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,232,455
Number of Sequences: 1393205
Number of extensions: 7979006
Number of successful extensions: 20944
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 20382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20933
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
