Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001286A_C01 KMC001286A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9XH45|RS7_BRAOL 40S ribosomal protein S7 gi|5532505|gb|AAD44... 54 7e-09
sp|Q9ZNS1|RS7_AVIMR 40S ribosomal protein S7 gi|3851636|gb|AAC97... 56 9e-09
emb|CAC44242.1| Ribosomal protein S7 [Hordeum vulgare subsp. vul... 54 2e-08
gb|AAM64364.1| 40S ribosomal protein S7-like [Arabidopsis thaliana] 52 7e-08
ref|NP_197117.1| 40S ribosomal protein S7-like; protein id: At5g... 52 7e-08
>sp|Q9XH45|RS7_BRAOL 40S ribosomal protein S7 gi|5532505|gb|AAD44761.1|AF144752_1 40S
ribosomal protein S7 homolog [Brassica oleracea]
Length = 191
Score = 53.5 bits (127), Expect(2) = 7e-09
Identities = 27/40 (67%), Positives = 32/40 (79%)
Frame = -2
Query: 393 LLRLPKEGSTVQPLRTRTLTAVYEAMLGDVISPAEIVGKR 274
++R PK+GS VQ R RTLT+V+EAML DV PAEIVGKR
Sbjct: 101 IMRPPKKGSAVQRPRNRTLTSVHEAMLEDVAYPAEIVGKR 140
Score = 27.7 bits (60), Expect(2) = 7e-09
Identities = 18/42 (42%), Positives = 23/42 (53%)
Frame = -3
Query: 272 RFRVDGSKIMKECNSLICIATRRILRPPKKVLLYNTQYKLET 147
R+RVDG+KIMK + PK+ NT+YKLET
Sbjct: 142 RYRVDGTKIMK------------VYLEPKE--RNNTEYKLET 169
>sp|Q9ZNS1|RS7_AVIMR 40S ribosomal protein S7 gi|3851636|gb|AAC97947.1| unknown
[Avicennia marina] gi|4128206|gb|AAD03501.1| 40S
ribosome protein S7 [Avicennia marina]
Length = 190
Score = 55.8 bits (133), Expect(2) = 9e-09
Identities = 27/40 (67%), Positives = 34/40 (84%)
Frame = -2
Query: 393 LLRLPKEGSTVQPLRTRTLTAVYEAMLGDVISPAEIVGKR 274
+LR PK+GS VQ R+RTLTAV++AML D++ PAEIVGKR
Sbjct: 101 ILRPPKKGSAVQRPRSRTLTAVHDAMLEDIVYPAEIVGKR 140
Score = 25.0 bits (53), Expect(2) = 9e-09
Identities = 10/12 (83%), Positives = 12/12 (99%)
Frame = -3
Query: 275 VRFRVDGSKIMK 240
VR+R+DGSKIMK
Sbjct: 141 VRYRLDGSKIMK 152
>emb|CAC44242.1| Ribosomal protein S7 [Hordeum vulgare subsp. vulgare]
Length = 191
Score = 53.5 bits (127), Expect(2) = 2e-08
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = -2
Query: 393 LLRLPKEGSTVQPLRTRTLTAVYEAMLGDVISPAEIVGKR 274
++R PK+GS VQ RTRTLTAV++ +L DV+ PAEIVGKR
Sbjct: 100 IVRPPKKGSAVQRPRTRTLTAVHDGILEDVVYPAEIVGKR 139
Score = 26.6 bits (57), Expect(2) = 2e-08
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -3
Query: 275 VRFRVDGSKIMKECNSLICIATRRILRPPKKVLLYNTQYKLET 147
VR+R+DG+K++K I PK+ NT+YKLET
Sbjct: 140 VRYRLDGAKVIK------------IYLDPKE--RNNTEYKLET 168
>gb|AAM64364.1| 40S ribosomal protein S7-like [Arabidopsis thaliana]
Length = 190
Score = 52.4 bits (124), Expect(2) = 7e-08
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = -2
Query: 393 LLRLPKEGSTVQPLRTRTLTAVYEAMLGDVISPAEIVGKR 274
++R PK+G+ VQ R RTLT+V+EAML DV PAEIVGKR
Sbjct: 101 IMRPPKKGAAVQRPRNRTLTSVHEAMLEDVAFPAEIVGKR 140
Score = 25.4 bits (54), Expect(2) = 7e-08
Identities = 18/42 (42%), Positives = 22/42 (51%)
Frame = -3
Query: 272 RFRVDGSKIMKECNSLICIATRRILRPPKKVLLYNTQYKLET 147
R+R+DGSKIMK L +K NT+YKLET
Sbjct: 142 RYRLDGSKIMKV-----------FLDAKEK---NNTEYKLET 169
>ref|NP_197117.1| 40S ribosomal protein S7-like; protein id: At5g16130.1, supported
by cDNA: 23518. [Arabidopsis thaliana]
gi|11276554|pir||T51483 40S ribosomal protein S7-like -
Arabidopsis thaliana gi|9755823|emb|CAC01854.1| 40S
ribosomal protein S7-like [Arabidopsis thaliana]
Length = 190
Score = 52.4 bits (124), Expect(2) = 7e-08
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = -2
Query: 393 LLRLPKEGSTVQPLRTRTLTAVYEAMLGDVISPAEIVGKR 274
++R PK+G+ VQ R RTLT+V+EAML DV PAEIVGKR
Sbjct: 101 IMRPPKKGAAVQRPRNRTLTSVHEAMLEDVAFPAEIVGKR 140
Score = 25.4 bits (54), Expect(2) = 7e-08
Identities = 18/42 (42%), Positives = 22/42 (51%)
Frame = -3
Query: 272 RFRVDGSKIMKECNSLICIATRRILRPPKKVLLYNTQYKLET 147
R+R+DGSKIMK L +K NT+YKLET
Sbjct: 142 RYRLDGSKIMKV-----------FLDAKEK---NNTEYKLET 169
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,830,842
Number of Sequences: 1393205
Number of extensions: 9872614
Number of successful extensions: 24848
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 24228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24840
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
