Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001284A_C01 KMC001284A_c01
(674 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201235.2| GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone... 101 8e-21
sp|P47924|GCH2_ARATH Riboflavin biosynthesis protein ribA [Inclu... 101 8e-21
gb|AAO72560.1| GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-... 93 4e-18
ref|NP_568913.1| GTP cyclohydrolase II / 3,4-dihydroxy-2-butanon... 88 9e-17
pir||T06410 GTP cyclohydrolase II (EC 3.5.4.25) / 3, 4-dihydroxy... 76 4e-13
>ref|NP_201235.2| GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone-4-phoshate synthase
(emb|CAA03884.1); protein id: At5g64300.1, supported by
cDNA: gi_940382 [Arabidopsis thaliana]
gi|1084339|pir||JC4209 GTP cyclohydrolase II (EC
3.5.4.25) - Arabidopsis thaliana
gi|940383|dbj|BAA08113.1| GTP cyclohydrolase II
[Arabidopsis thaliana]
Length = 245
Score = 101 bits (252), Expect = 8e-21
Identities = 46/60 (76%), Positives = 53/60 (87%)
Frame = -3
Query: 672 GVRSMKLMTNNPSKYGGLKGYGLTVSGRIPLLTLITSENKRYLETKRVKMGHVYGKEFNG 493
GVR+MKLMTNNP+KY GLKGYGL + GR+PLL+LIT ENKRYLETKR KMGH+YG +F G
Sbjct: 174 GVRTMKLMTNNPAKYVGLKGYGLAIVGRVPLLSLITKENKRYLETKRTKMGHMYGLKFKG 233
>sp|P47924|GCH2_ARATH Riboflavin biosynthesis protein ribA [Includes: GTP cyclohydrolase
II ; 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP
synthase)] gi|2462925|emb|CAA03884.1| GTP cyclohydrolase
II / 3,4-dihydroxy-2-butanone-4-phoshate synthase
[Arabidopsis thaliana]
Length = 543
Score = 101 bits (252), Expect = 8e-21
Identities = 46/60 (76%), Positives = 53/60 (87%)
Frame = -3
Query: 672 GVRSMKLMTNNPSKYGGLKGYGLTVSGRIPLLTLITSENKRYLETKRVKMGHVYGKEFNG 493
GVR+MKLMTNNP+KY GLKGYGL + GR+PLL+LIT ENKRYLETKR KMGH+YG +F G
Sbjct: 472 GVRTMKLMTNNPAKYVGLKGYGLAIVGRVPLLSLITKENKRYLETKRTKMGHMYGLKFKG 531
>gb|AAO72560.1| GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate
synthase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 460
Score = 92.8 bits (229), Expect = 4e-18
Identities = 44/70 (62%), Positives = 54/70 (76%), Gaps = 5/70 (7%)
Frame = -3
Query: 672 GVRSMKLMTNNPSKYGGLKGYGLTVSGRIPLLTLITSENKRYLETKRVKMGHVYGKEFNG 493
GVR+M+LMTNNP+K+ GLKGYGL V GR+P+++ IT EN+RYLETKR KMGHVYG + G
Sbjct: 378 GVRTMRLMTNNPAKFVGLKGYGLAVVGRVPVISPITKENQRYLETKRTKMGHVYGSDLPG 437
Query: 492 -----LLTPD 478
L PD
Sbjct: 438 NVPEEFLNPD 447
>ref|NP_568913.1| GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone-4-phoshate
synthase - like protein; protein id: At5g59750.1,
supported by cDNA: gi_13605707, supported by cDNA:
gi_15215751 [Arabidopsis thaliana]
gi|9758840|dbj|BAB09512.1| GTP cyclohydrolase II;
3,4-dihydroxy-2-butanone-4-phoshate synthase
[Arabidopsis thaliana]
gi|13605708|gb|AAK32847.1|AF361835_1 AT5g59750/mth12_150
[Arabidopsis thaliana] gi|15215752|gb|AAK91421.1|
AT5g59750/mth12_150 [Arabidopsis thaliana]
gi|27363454|gb|AAO11646.1| At5g59750/mth12_150
[Arabidopsis thaliana]
Length = 509
Score = 88.2 bits (217), Expect = 9e-17
Identities = 39/59 (66%), Positives = 50/59 (84%)
Frame = -3
Query: 672 GVRSMKLMTNNPSKYGGLKGYGLTVSGRIPLLTLITSENKRYLETKRVKMGHVYGKEFN 496
GVR+M+LMTNNP+K+ GLKGYGL V GR+P++T IT EN+RY+ETKR KMGH+Y + N
Sbjct: 446 GVRTMRLMTNNPAKFTGLKGYGLAVVGRVPVVTPITKENRRYMETKRKKMGHIYISDNN 504
>pir||T06410 GTP cyclohydrolase II (EC 3.5.4.25) / 3, 4-dihydroxy-2-butanone
4-phosphate synthase (EC 5.4.99.-) ribA - tomato
gi|2578365|emb|CAA05308.1| GTP cyclohydrolase II /
3,4-dihydroxy-2-butanone-4-phosphate synthase
[Lycopersicon esculentum]
Length = 552
Score = 76.3 bits (186), Expect = 4e-13
Identities = 36/71 (50%), Positives = 46/71 (64%)
Frame = -3
Query: 672 GVRSMKLMTNNPSKYGGLKGYGLTVSGRIPLLTLITSENKRYLETKRVKMGHVYGKEFNG 493
GV +MK +TNNP++Y LKGYGL +SG +P++T T+ YLET R KMGHVYG
Sbjct: 472 GVPTMKFITNNPAQYSWLKGYGLAISGMVPVVTPFTNHYDTYLETTRAKMGHVYGLNLIR 531
Query: 492 LLTPDGSDNGK 460
T + NGK
Sbjct: 532 PATSTSTTNGK 542
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,759,998
Number of Sequences: 1393205
Number of extensions: 11309721
Number of successful extensions: 22528
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 21941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22518
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
