Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001280A_C01 KMC001280A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79638.1|AC025416_12 F5O11.19 [Arabidopsis thaliana] 44 0.002
ref|NP_172707.1| hypothetical protein; protein id: At1g12450.1 [... 44 0.002
gb|AAO42138.1| unknown protein [Arabidopsis thaliana] gi|2882731... 38 0.12
ref|NP_194016.1| unknown protein; protein id: At4g22850.1 [Arabi... 38 0.12
ref|NP_700612.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.75
>gb|AAF79638.1|AC025416_12 F5O11.19 [Arabidopsis thaliana]
Length = 371
Score = 43.5 bits (101), Expect = 0.002
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = -2
Query: 601 GFCVTVATTLVVTVYAKRRLKELQSEDDESL 509
GFCVT + T+V T+YAK++L +QSED E+L
Sbjct: 335 GFCVTASATIVCTIYAKKKLSAMQSEDVETL 365
>ref|NP_172707.1| hypothetical protein; protein id: At1g12450.1 [Arabidopsis
thaliana]
Length = 303
Score = 43.5 bits (101), Expect = 0.002
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = -2
Query: 601 GFCVTVATTLVVTVYAKRRLKELQSEDDESL 509
GFCVT + T+V T+YAK++L +QSED E+L
Sbjct: 267 GFCVTASATIVCTIYAKKKLSAMQSEDVETL 297
>gb|AAO42138.1| unknown protein [Arabidopsis thaliana] gi|28827310|gb|AAO50499.1|
unknown protein [Arabidopsis thaliana]
Length = 296
Score = 37.7 bits (86), Expect = 0.12
Identities = 16/31 (51%), Positives = 24/31 (76%)
Frame = -2
Query: 601 GFCVTVATTLVVTVYAKRRLKELQSEDDESL 509
GF TVATT+++T YAKR+L+ ++ ED+ L
Sbjct: 265 GFLATVATTILITKYAKRQLETMKKEDEALL 295
>ref|NP_194016.1| unknown protein; protein id: At4g22850.1 [Arabidopsis thaliana]
gi|7486891|pir||T04580 hypothetical protein T12H17.240 -
Arabidopsis thaliana gi|2832606|emb|CAA16570.1|
predicted protein [Arabidopsis thaliana]
gi|3292810|emb|CAA19800.1| putative protein [Arabidopsis
thaliana] gi|7269132|emb|CAB79240.1| predicted protein
[Arabidopsis thaliana]
Length = 217
Score = 37.7 bits (86), Expect = 0.12
Identities = 16/31 (51%), Positives = 24/31 (76%)
Frame = -2
Query: 601 GFCVTVATTLVVTVYAKRRLKELQSEDDESL 509
GF TVATT+++T YAKR+L+ ++ ED+ L
Sbjct: 186 GFLATVATTILITKYAKRQLETMKKEDEALL 216
>ref|NP_700612.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23495003|gb|AAN35336.1|AE014831_12 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1455
Score = 35.0 bits (79), Expect = 0.75
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Frame = +3
Query: 390 LLDQTSPSRAMRSTCQHHIGVAASYSKQ*KPRLK-------KLDYLNNDSSSSLCNSL 542
LL+ + + A+ TC+ ++ V +YS+Q K LK + DY+NN S+S L N L
Sbjct: 623 LLNINANTIALNCTCKFYVDVNYTYSEQYKMHLKGYLHKMNEFDYINNFSASYLLNQL 680
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,580,125
Number of Sequences: 1393205
Number of extensions: 9588569
Number of successful extensions: 18299
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18294
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
