Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001275A_C01 KMC001275A_c01
(464 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 59 2e-08
dbj|BAB01814.1| contains similarity to non-LTR retroelement reve... 58 6e-08
gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza ... 47 8e-08
gb|AAO00713.1| putative reverse transcriptase [Oryza sativa (jap... 49 1e-07
ref|NP_182048.1| putative non-LTR retroelement reverse transcrip... 56 2e-07
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1|AC007915_21 F27F5.21
[Arabidopsis thaliana]
Length = 1023
Score = 59.3 bits (142), Expect = 2e-08
Identities = 28/60 (46%), Positives = 38/60 (62%)
Frame = -1
Query: 194 KFLYRAGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKFYLEW*CVSEEYSLAWM 15
KFL + G+EV+IKSV +PTY+MSCF LP +I S++ V KF+ W E + WM
Sbjct: 632 KFLSKGGKEVMIKSVVAVLPTYVMSCFRLPKTITSKLTSAVAKFW--WSSDGESRGMHWM 689
Score = 35.4 bits (80), Expect = 0.30
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 88 RLKAWLVSFIWSGDVSRRSIHWLGWKKLC 2
+L + + F WS D R +HW+ W KLC
Sbjct: 667 KLTSAVAKFWWSSDGESRGMHWMAWNKLC 695
>dbj|BAB01814.1| contains similarity to non-LTR retroelement reverse
transcriptase~gene_id:MXO21.2 [Arabidopsis thaliana]
Length = 170
Score = 57.8 bits (138), Expect = 6e-08
Identities = 27/60 (45%), Positives = 38/60 (63%)
Frame = -1
Query: 194 KFLYRAGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKFYLEW*CVSEEYSLAWM 15
KFL + G+EV+IK V A+PTY+MSCF LP +I S++ + KF+ W E + WM
Sbjct: 36 KFLSKGGKEVMIKLVATALPTYVMSCFTLPKTITSKLTSAIPKFW--WSSNGESRGMHWM 93
Score = 31.6 bits (70), Expect = 4.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 88 RLKAWLVSFIWSGDVSRRSIHWLGWKKLC 2
+L + + F WS + R +HW+ W K+C
Sbjct: 71 KLTSAIPKFWWSSNGESRGMHWMAWDKVC 99
>gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza sativa]
Length = 1185
Score = 47.4 bits (111), Expect(2) = 8e-08
Identities = 21/46 (45%), Positives = 29/46 (62%)
Frame = -1
Query: 197 EKFLYRAGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKFY 60
EK L G+EVLIKS+ +AIP + MS F +P IC I + +F+
Sbjct: 599 EKMLSTGGKEVLIKSIAQAIPVFAMSVFRIPKKICDCISEAIARFW 644
Score = 29.6 bits (65), Expect(2) = 8e-08
Identities = 9/24 (37%), Positives = 13/24 (53%)
Frame = -2
Query: 73 LVSFIWSGDVSRRSIHWLGWKKLC 2
+ F W D + R IHW W ++C
Sbjct: 640 IARFWWGDDENHRRIHWKAWWRMC 663
>gb|AAO00713.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1557
Score = 49.3 bits (116), Expect(2) = 1e-07
Identities = 20/46 (43%), Positives = 30/46 (64%)
Frame = -1
Query: 197 EKFLYRAGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKFY 60
E +L G+EVLIK+V +AIP Y+M F LP+S+C + + F+
Sbjct: 1150 ENYLSSGGKEVLIKAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFW 1195
Score = 26.9 bits (58), Expect(2) = 1e-07
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -2
Query: 67 SFIWSGDVSRRSIHWLGWKKL 5
+F W + +R HW WK L
Sbjct: 1193 NFWWGAEKGKRKTHWKAWKSL 1213
>ref|NP_182048.1| putative non-LTR retroelement reverse transcriptase; protein id:
At2g45230.1 [Arabidopsis thaliana]
gi|25408936|pir||A84888 hypothetical protein At2g45230
[imported] - Arabidopsis thaliana
gi|2583130|gb|AAB82639.1| putative non-LTR retroelement
reverse transcriptase [Arabidopsis thaliana]
Length = 1374
Score = 56.2 bits (134), Expect = 2e-07
Identities = 26/58 (44%), Positives = 37/58 (62%)
Frame = -1
Query: 191 FLYRAGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKFYLEW*CVSEEYSLAW 18
FL G+E+L+K+V A+PTY MSCF +P +IC QIE ++ +F+ W E L W
Sbjct: 783 FLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFW--WKNKKEGRGLHW 838
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,283,603
Number of Sequences: 1393205
Number of extensions: 8002862
Number of successful extensions: 28797
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 28398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28795
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
