Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001259A_C01 KMC001259A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182231.1| unknown protein [Arabidopsis thaliana] gi|74524... 140 2e-32
pir||T52602 squamosa promoter binding protein 1 [imported] - Ara... 140 2e-32
ref|NP_182230.2| putative squamosa-promoter binding protein; pro... 140 2e-32
ref|NP_191562.1| squamosa promoter binding protein-like 12; prot... 134 1e-30
dbj|BAA96636.1| unnamed protein product [Oryza sativa (japonica ... 95 6e-19
>ref|NP_182231.1| unknown protein [Arabidopsis thaliana] gi|7452429|pir||T02179
hypothetical protein At2g47080 [imported] - Arabidopsis
thaliana gi|3522938|gb|AAC34220.1| unknown protein
[Arabidopsis thaliana]
Length = 383
Score = 140 bits (352), Expect = 2e-32
Identities = 75/151 (49%), Positives = 97/151 (63%), Gaps = 3/151 (1%)
Frame = -2
Query: 607 VGIEAWESARDNTGLTPNDYASLRGHYTYIQLVQKKTSKKGGRQ--CVLDIPGTLVDSYT 434
VGIEAW++ RD+TG TP DYA LRGH++YI L+Q+K +KK + V++IP + D
Sbjct: 243 VGIEAWKTCRDSTGFTPEDYARLRGHFSYIHLIQRKINKKSTTEDHVVVNIPVSFSDREQ 302
Query: 433 KQKQSERHGTSKVSSLQTVKIETTTVPLQCGLCKHKQAYGGMRPALVYRPVMLSMVTIAA 254
K+ +S ++ +E T +P C LC HK YG R ++ YRP MLSMV IAA
Sbjct: 303 KEPKSGPMASA---------LEITQIP--CKLCDHKLVYGTTRRSVAYRPAMLSMVAIAA 351
Query: 253 VCVCVALFFKSLPRV-YMTQPFNWESLKYGS 164
VCVCVAL FKS P V Y+ QPF WE L YG+
Sbjct: 352 VCVCVALLFKSCPEVLYVFQPFRWELLDYGT 382
>pir||T52602 squamosa promoter binding protein 1 [imported] - Arabidopsis thaliana
gi|5931653|emb|CAB56580.1| squamosa promoter binding
protein-like 1 [Arabidopsis thaliana]
Length = 881
Score = 140 bits (352), Expect = 2e-32
Identities = 75/151 (49%), Positives = 97/151 (63%), Gaps = 3/151 (1%)
Frame = -2
Query: 607 VGIEAWESARDNTGLTPNDYASLRGHYTYIQLVQKKTSKKGGRQ--CVLDIPGTLVDSYT 434
VGIEAW++ RD+TG TP DYA LRGH++YI L+Q+K +KK + V++IP + D
Sbjct: 741 VGIEAWKTCRDSTGFTPEDYARLRGHFSYIHLIQRKINKKSTTEDHVVVNIPVSFSDREQ 800
Query: 433 KQKQSERHGTSKVSSLQTVKIETTTVPLQCGLCKHKQAYGGMRPALVYRPVMLSMVTIAA 254
K+ +S ++ +E T +P C LC HK YG R ++ YRP MLSMV IAA
Sbjct: 801 KEPKSGPMASA---------LEITQIP--CKLCDHKLVYGTTRRSVAYRPAMLSMVAIAA 849
Query: 253 VCVCVALFFKSLPRV-YMTQPFNWESLKYGS 164
VCVCVAL FKS P V Y+ QPF WE L YG+
Sbjct: 850 VCVCVALLFKSCPEVLYVFQPFRWELLDYGT 880
>ref|NP_182230.2| putative squamosa-promoter binding protein; protein id: At2g47070.1
[Arabidopsis thaliana] gi|25456637|pir||T52601 squamosa
promoter binding protein 1 [imported] - Arabidopsis
thaliana gi|3650274|emb|CAA09698.1| squamosa-promoter
binding protein-like 1 [Arabidopsis thaliana]
gi|5931655|emb|CAB56581.1| squamosa promoter binding
protein-like 1 [Arabidopsis thaliana]
Length = 881
Score = 140 bits (352), Expect = 2e-32
Identities = 75/151 (49%), Positives = 97/151 (63%), Gaps = 3/151 (1%)
Frame = -2
Query: 607 VGIEAWESARDNTGLTPNDYASLRGHYTYIQLVQKKTSKKGGRQ--CVLDIPGTLVDSYT 434
VGIEAW++ RD+TG TP DYA LRGH++YI L+Q+K +KK + V++IP + D
Sbjct: 741 VGIEAWKTCRDSTGFTPEDYARLRGHFSYIHLIQRKINKKSTTEDHVVVNIPVSFSDREQ 800
Query: 433 KQKQSERHGTSKVSSLQTVKIETTTVPLQCGLCKHKQAYGGMRPALVYRPVMLSMVTIAA 254
K+ +S ++ +E T +P C LC HK YG R ++ YRP MLSMV IAA
Sbjct: 801 KEPKSGPMASA---------LEITQIP--CKLCDHKLVYGTTRRSVAYRPAMLSMVAIAA 849
Query: 253 VCVCVALFFKSLPRV-YMTQPFNWESLKYGS 164
VCVCVAL FKS P V Y+ QPF WE L YG+
Sbjct: 850 VCVCVALLFKSCPEVLYVFQPFRWELLDYGT 880
>ref|NP_191562.1| squamosa promoter binding protein-like 12; protein id: At3g60030.1
[Arabidopsis thaliana] gi|11358858|pir||T47827 squamosa
promoter binding protein-like 12 [imported] - Arabidopsis
thaliana gi|6006395|emb|CAB56768.1| squamosa promoter
binding protein-like 12 [Arabidopsis thaliana]
gi|6006403|emb|CAB56769.1| squamosa promoter binding
protein-like 12 [Arabidopsis thaliana]
gi|7076756|emb|CAB75918.1| squamosa promoter binding
protein-like 12 [Arabidopsis thaliana]
gi|28392866|gb|AAO41870.1| putative squamosa promoter
binding protein 12 [Arabidopsis thaliana]
Length = 927
Score = 134 bits (336), Expect = 1e-30
Identities = 73/151 (48%), Positives = 97/151 (63%), Gaps = 4/151 (2%)
Frame = -2
Query: 604 GIEAWESARDNTGLTPNDYASLRGHYTYIQLVQKKTSKK--GGRQCVLDIPGTLVDSYTK 431
GI+AW+++RDNTG TP DYA LRGH++YI LVQ+K S+K V++IP +S+
Sbjct: 786 GIQAWKNSRDNTGFTPEDYARLRGHFSYIHLVQRKLSRKPIAKEHVVVNIP----ESFNI 841
Query: 430 QKQSERHGTSKVSSLQTVKIETTTVPLQCGLCKHKQAY-GGMRPALVYRPVMLSMVTIAA 254
+ + E+ SSL+ +I QC LC HK+ + ++ YRP MLSMV IAA
Sbjct: 842 EHKQEKRSPMDSSSLEITQIN------QCKLCDHKRVFVTTHHKSVAYRPAMLSMVAIAA 895
Query: 253 VCVCVALFFKSLPRV-YMTQPFNWESLKYGS 164
VCVCVAL FKS P V Y+ QPF WE L+YG+
Sbjct: 896 VCVCVALLFKSCPEVLYVFQPFRWELLEYGT 926
>dbj|BAA96636.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 862
Score = 95.1 bits (235), Expect = 6e-19
Identities = 59/152 (38%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Frame = -2
Query: 607 VGIEAWESARDNTGLTPNDYASLRGHYTYIQLVQKKTSKKGGRQCV-LDIPGTLVDSYTK 431
+GI+AW++ARD TGLTP DYA RGH +YI++VQ K + + V + I T +
Sbjct: 709 LGIKAWKNARDATGLTPEDYARKRGHESYIEMVQNKIDSRLPKAHVSVTISSTTSTTDFT 768
Query: 430 QKQSERHGTSKVSSLQTVKIE--TTTVPLQCGLCKHKQAY-GGMRPALVYRPVMLSMVTI 260
+K + + T+ ++ K + +T PL C C + AY + L RP +LS+V I
Sbjct: 769 EKHASQSKTTDQTAFDVEKGQQISTKPPLSCRQCLPELAYRHHLNRFLSTRPAVLSLVAI 828
Query: 259 AAVCVCVALFFKSLPRV-YMTQPFNWESLKYG 167
AAVCVCV L + P + M PF W SL+ G
Sbjct: 829 AAVCVCVGLIMQGPPHIGGMRGPFRWNSLRSG 860
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,569,131
Number of Sequences: 1393205
Number of extensions: 12191752
Number of successful extensions: 28852
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 27789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28832
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
