Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001258A_C01 KMC001258A_c01
(473 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL87122.1|AF479279_1 SEC6 [Arabidopsis thaliana] 103 7e-22
pir||G96740 hypothetical protein F14O23.20 [imported] - Arabidop... 103 7e-22
ref|NP_565026.1| expressed protein; protein id: At1g71820.1, sup... 103 7e-22
ref|NP_279623.1| endonuclease III; NthA2 [Halobacterium sp. NRC-... 34 0.69
dbj|BAC65023.1| B1015H11.7 [Oryza sativa (japonica cultivar-group)] 33 2.0
>gb|AAL87122.1|AF479279_1 SEC6 [Arabidopsis thaliana]
Length = 751
Score = 103 bits (258), Expect = 7e-22
Identities = 49/72 (68%), Positives = 56/72 (77%)
Frame = -3
Query: 384 TTITTNILEHHLDCPPEVVEKLVGLREGIPRKDAKEVIQECKEIYENSLVDGRPPKASFC 205
T + +NILEH DCP EVVEKLV LREGIPRKD KEV+QECKEIYEN+LVDG PPK F
Sbjct: 673 TLVYSNILEHQPDCPAEVVEKLVSLREGIPRKDTKEVVQECKEIYENTLVDGNPPKTGFV 732
Query: 204 FSTREVLTSFQG 169
F + LT+ +G
Sbjct: 733 FPRVKCLTASKG 744
Score = 71.6 bits (174), Expect = 4e-12
Identities = 52/117 (44%), Positives = 66/117 (55%), Gaps = 8/117 (6%)
Frame = -1
Query: 473 EHKSVSKVENRVSVLSDLRELASAESLDTLPLLPRIYSNITWTARLKLSRNSLVYEKEFL 294
E+ S SKVE+R+ ++SDLRELASAESLD L +YSNI L+ + E L
Sbjct: 643 EYISASKVESRIRIMSDLRELASAESLDAFTL---VYSNI-----LEHQPDCPAEVVEKL 694
Query: 293 VKM----PRRSYK----SAKRYMKILLLMEDLQKPVFVFRRVKCLQASKGGLWRKLT 147
V + PR+ K K + L+ + K FVF RVKCL ASKG +WRKLT
Sbjct: 695 VSLREGIPRKDTKEVVQECKEIYENTLVDGNPPKTGFVFPRVKCLTASKGSMWRKLT 751
>pir||G96740 hypothetical protein F14O23.20 [imported] - Arabidopsis thaliana
gi|7239509|gb|AAF43235.1|AC012654_19 EST gb|AA712174
comes from this gene. [Arabidopsis thaliana]
Length = 739
Score = 103 bits (258), Expect = 7e-22
Identities = 49/72 (68%), Positives = 56/72 (77%)
Frame = -3
Query: 384 TTITTNILEHHLDCPPEVVEKLVGLREGIPRKDAKEVIQECKEIYENSLVDGRPPKASFC 205
T + +NILEH DCP EVVEKLV LREGIPRKD KEV+QECKEIYEN+LVDG PPK F
Sbjct: 661 TLVYSNILEHQPDCPAEVVEKLVSLREGIPRKDTKEVVQECKEIYENTLVDGNPPKTGFV 720
Query: 204 FSTREVLTSFQG 169
F + LT+ +G
Sbjct: 721 FPRVKCLTASKG 732
Score = 71.6 bits (174), Expect = 4e-12
Identities = 52/117 (44%), Positives = 66/117 (55%), Gaps = 8/117 (6%)
Frame = -1
Query: 473 EHKSVSKVENRVSVLSDLRELASAESLDTLPLLPRIYSNITWTARLKLSRNSLVYEKEFL 294
E+ S SKVE+R+ ++SDLRELASAESLD L +YSNI L+ + E L
Sbjct: 631 EYISASKVESRIRIMSDLRELASAESLDAFTL---VYSNI-----LEHQPDCPAEVVEKL 682
Query: 293 VKM----PRRSYK----SAKRYMKILLLMEDLQKPVFVFRRVKCLQASKGGLWRKLT 147
V + PR+ K K + L+ + K FVF RVKCL ASKG +WRKLT
Sbjct: 683 VSLREGIPRKDTKEVVQECKEIYENTLVDGNPPKTGFVFPRVKCLTASKGSMWRKLT 739
>ref|NP_565026.1| expressed protein; protein id: At1g71820.1, supported by cDNA:
gi_15028128, supported by cDNA: gi_19387171 [Arabidopsis
thaliana] gi|15028129|gb|AAK76688.1| unknown protein
[Arabidopsis thaliana] gi|22136818|gb|AAM91753.1|
unknown protein [Arabidopsis thaliana]
Length = 752
Score = 103 bits (258), Expect = 7e-22
Identities = 49/72 (68%), Positives = 56/72 (77%)
Frame = -3
Query: 384 TTITTNILEHHLDCPPEVVEKLVGLREGIPRKDAKEVIQECKEIYENSLVDGRPPKASFC 205
T + +NILEH DCP EVVEKLV LREGIPRKD KEV+QECKEIYEN+LVDG PPK F
Sbjct: 674 TLVYSNILEHQPDCPAEVVEKLVSLREGIPRKDTKEVVQECKEIYENTLVDGNPPKTGFV 733
Query: 204 FSTREVLTSFQG 169
F + LT+ +G
Sbjct: 734 FPRVKCLTASKG 745
Score = 71.6 bits (174), Expect = 4e-12
Identities = 52/117 (44%), Positives = 66/117 (55%), Gaps = 8/117 (6%)
Frame = -1
Query: 473 EHKSVSKVENRVSVLSDLRELASAESLDTLPLLPRIYSNITWTARLKLSRNSLVYEKEFL 294
E+ S SKVE+R+ ++SDLRELASAESLD L +YSNI L+ + E L
Sbjct: 644 EYISASKVESRIRIMSDLRELASAESLDAFTL---VYSNI-----LEHQPDCPAEVVEKL 695
Query: 293 VKM----PRRSYK----SAKRYMKILLLMEDLQKPVFVFRRVKCLQASKGGLWRKLT 147
V + PR+ K K + L+ + K FVF RVKCL ASKG +WRKLT
Sbjct: 696 VSLREGIPRKDTKEVVQECKEIYENTLVDGNPPKTGFVFPRVKCLTASKGSMWRKLT 752
>ref|NP_279623.1| endonuclease III; NthA2 [Halobacterium sp. NRC-1]
gi|25292132|pir||C84217 endonuclease III [imported] -
Halobacterium sp. NRC-1 gi|10580185|gb|AAG19103.1|
endonuclease III; NthA2 [Halobacterium sp. NRC-1]
Length = 227
Score = 34.3 bits (77), Expect = 0.69
Identities = 18/61 (29%), Positives = 33/61 (53%)
Frame = -3
Query: 414 TCFSRESGYLTTITTNILEHHLDCPPEVVEKLVGLREGIPRKDAKEVIQECKEIYENSLV 235
T ++ ++GY+ + +ILE H P+ + L L G+ RK A V+Q ++ + +V
Sbjct: 86 TYYNSKAGYIKSAAQSILEDHDGAVPDTMSDLTDL-SGVGRKTANVVLQHGHDLTQGIVV 144
Query: 234 D 232
D
Sbjct: 145 D 145
>dbj|BAC65023.1| B1015H11.7 [Oryza sativa (japonica cultivar-group)]
Length = 149
Score = 32.7 bits (73), Expect = 2.0
Identities = 18/44 (40%), Positives = 25/44 (55%), Gaps = 1/44 (2%)
Frame = +2
Query: 224 GLPSTREFSY-ISLHSCMTSLASLRGIPSRRPTSFSTTSGGQSR 352
GLPS ++ + C S +SL G+PS PTSF T++ G R
Sbjct: 103 GLPSPSAYTAGLLCRRCWASTSSLTGLPSSLPTSFITSTVGVRR 146
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,402,645
Number of Sequences: 1393205
Number of extensions: 7225475
Number of successful extensions: 20771
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 20263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20768
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
