Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001248A_C01 KMC001248A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171714.1| unknown protein; protein id: At1g02120.1 [Arabi... 68 7e-11
ref|NP_008787.1|ND5_15102 NADH dehydrogenase subunit 5 [Eumeces ... 37 0.17
ref|NP_011754.1| protein containing six kelch repeats suspected ... 34 1.1
ref|NP_198993.1| putative protein; protein id: At5g41780.1 [Arab... 33 2.5
emb|CAD29760.1| putative carbapenem synthetase [Photorhabdus lum... 33 3.3
>ref|NP_171714.1| unknown protein; protein id: At1g02120.1 [Arabidopsis thaliana]
Length = 556
Score = 68.2 bits (165), Expect = 7e-11
Identities = 44/125 (35%), Positives = 65/125 (51%)
Frame = -3
Query: 549 QAQSNVVDPSLVPSMFKELTTKFRSSLKSQSDLSLLLVTIFALIFFMQQFSILVLLARPQ 370
+ + +V +V KE S +K QS ++V FA+I MQ +I+VLL +
Sbjct: 431 EGKVEMVGEGVVKKSLKEAWVNLTSFVKRQSGTRQVIVLAFAVILLMQ-VTIVVLLKKGG 489
Query: 369 HVHVNTPIDFMNRMENGASRSASDVAWMEKRIHHLKDEMYMVETRLERMRNEHALLKKQL 190
V + NG + + W+EKR+H L++EM MVE RL+RMR +HA LK Q
Sbjct: 490 GGQVEYHERYDEYSVNGET-----LGWLEKRMHFLREEMMMVEDRLQRMRQDHAALKAQF 544
Query: 189 QDLEQ 175
LE+
Sbjct: 545 HHLER 549
>ref|NP_008787.1|ND5_15102 NADH dehydrogenase subunit 5 [Eumeces egregius]
gi|5103719|dbj|BAA79220.1| NADH dehydrogenase subunit 5
[Eumeces egregius]
Length = 605
Score = 37.0 bits (84), Expect = 0.17
Identities = 23/79 (29%), Positives = 42/79 (53%)
Frame = -3
Query: 564 NPTSRQAQSNVVDPSLVPSMFKELTTKFRSSLKSQSDLSLLLVTIFALIFFMQQFSILVL 385
NP R A +++ L+ S + T ++ + + LS LLVT+F L++ ++ +
Sbjct: 454 NPIIRLALGSLLAGLLITSTLLPIKTT-AMTMSTLTKLSALLVTVFGLVYALELATQTTT 512
Query: 384 LARPQHVHVNTPIDFMNRM 328
L P+H N PI+F N++
Sbjct: 513 LVAPKH---NKPINFSNQL 528
>ref|NP_011754.1| protein containing six kelch repeats suspected of mediating binding
interactions with actin; similar to KEL1 and KEL3.;
Kel2p [Saccharomyces cerevisiae]
gi|1723756|sp|P50090|KEL2_YEAST Kelch repeats protein 2
gi|1362338|pir||S57704 hypothetical protein YGR238c -
yeast (Saccharomyces cerevisiae)
gi|886933|emb|CAA61189.1| ORF 882 [Saccharomyces
cerevisiae] gi|1323431|emb|CAA97266.1| ORF YGR238c
[Saccharomyces cerevisiae]
Length = 882
Score = 34.3 bits (77), Expect = 1.1
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = -3
Query: 327 ENGASRSASDVAWMEKRIHHLKDEMYMVETRLERMRNEHALLKKQLQDLEQK 172
+ GA + A+ +I++LK E+YM + + +++E LKK+L LEQK
Sbjct: 830 QRGAITHGNFDAFHRMKINNLKAELYMSKENRDSLKDELLALKKKLYTLEQK 881
>ref|NP_198993.1| putative protein; protein id: At5g41780.1 [Arabidopsis thaliana]
gi|10177362|dbj|BAB10653.1|
gene_id:K16L22.6~pir||E71606~similar to unknown protein
[Arabidopsis thaliana]
Length = 537
Score = 33.1 bits (74), Expect = 2.5
Identities = 17/55 (30%), Positives = 32/55 (57%)
Frame = -3
Query: 336 NRMENGASRSASDVAWMEKRIHHLKDEMYMVETRLERMRNEHALLKKQLQDLEQK 172
NR+ A S W++++ +++K E+ +E +LE + +LLK++L LE K
Sbjct: 412 NRVTRLAKEIDSARKWVKEKDNNMKHEVETLEAKLECREAQESLLKEKLSKLEAK 466
>emb|CAD29760.1| putative carbapenem synthetase [Photorhabdus luminescens subsp.
laumondii]
Length = 501
Score = 32.7 bits (73), Expect = 3.3
Identities = 41/134 (30%), Positives = 59/134 (43%), Gaps = 2/134 (1%)
Frame = +2
Query: 146 DTISNGGGYFCSRSCSCFFKSACSFRILSSLVSTMY-ISSLRW*ILFSIHATSEALLDAP 322
D +S G F S + FKS R + L+ +Y IS++R IL I S L D
Sbjct: 26 DELSTGTILFRSTTKVSKFKSE---RYTAFLIGNIYNISTIRS-ILGKIEGRSSVLSDVE 81
Query: 323 FSILFIKSIGVLTCTC*GLANSTSMLNCCMKKIRAKMVTRSRERSLW-LFKDDLNFVVNS 499
+L G + +A L KK +++T SR +L L + DL ++ NS
Sbjct: 82 ILLLSRDKFGNSIIS---IAEGDYCLFIEDKKGNIEVITESRGLNLVNLVQTDLIWITNS 138
Query: 500 LNIDGTSDGSTTFD 541
L I G +G FD
Sbjct: 139 LKIVGKVEGDKAFD 152
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,623,295
Number of Sequences: 1393205
Number of extensions: 8837471
Number of successful extensions: 25534
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25515
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
