Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001234A_C01 KMC001234A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T14276 myosin-like protein my2 - common sunflower (fragment... 67 1e-21
pir||T14279 myosin-like protein my5 - common sunflower gi|244418... 63 2e-20
pir||A59310 unconventional myosin heavy chain - maize gi|4733891... 64 6e-20
ref|NP_197549.1| myosin-like protein; protein id: At5g20490.1 [A... 60 2e-19
gb|AAL58953.1|AC091811_2 putative myosin [Oryza sativa] 59 4e-18
>pir||T14276 myosin-like protein my2 - common sunflower (fragment)
gi|2444176|gb|AAB71527.1| unconventional myosin
[Helianthus annuus]
Length = 1260
Score = 66.6 bits (161), Expect(2) = 1e-21
Identities = 44/98 (44%), Positives = 53/98 (53%), Gaps = 1/98 (1%)
Frame = +1
Query: 232 MSAPVNIIVGSHVWVEDPALTWIDGEFHSKSAVKKSMFALGMGKQLSKISQRFFPRIHEA 411
M+APVNIIVGSHVWVED AL WIDGE +A + + GK + + FP+ EA
Sbjct: 1 MAAPVNIIVGSHVWVEDRALAWIDGEVTRVNAQELHVHTT-KGKTIVTNVSKVFPKDTEA 59
Query: 412 SPGRC-GMT*QNCHICMQPGSLHNLAARYATQCNLYIY 522
PG MT +PG L NLA RY +Y Y
Sbjct: 60 PPGGVDDMT--RLSYLHEPGVLQNLATRYELN-EIYTY 94
Score = 57.8 bits (138), Expect(2) = 1e-21
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = +2
Query: 497 QLNAIYTYTGNILIAITPFHRLPHLYDTH 583
+LN IYTYTGNILIAI PF RLPHLYDTH
Sbjct: 87 ELNEIYTYTGNILIAINPFQRLPHLYDTH 115
>pir||T14279 myosin-like protein my5 - common sunflower
gi|2444180|gb|AAB71529.1| unconventional myosin
[Helianthus annuus]
Length = 1528
Score = 63.2 bits (152), Expect(2) = 2e-20
Identities = 42/98 (42%), Positives = 51/98 (51%), Gaps = 1/98 (1%)
Frame = +1
Query: 232 MSAPVNIIVGSHVWVEDPALTWIDGEFHSKSAVKKSMFALGMGKQLSKISQRFFPRIHEA 411
M+APVNIIVGSHVWVED L WIDGE + + + GK + + FP+ EA
Sbjct: 1 MAAPVNIIVGSHVWVEDRVLAWIDGEVTRINGQELHVHTT-KGKTIVTNVSKVFPKDTEA 59
Query: 412 SPGRC-GMT*QNCHICMQPGSLHNLAARYATQCNLYIY 522
PG MT +PG L NLA RY +Y Y
Sbjct: 60 PPGGVDDMT--RLSYLHEPGVLQNLATRYELN-EIYTY 94
Score = 57.8 bits (138), Expect(2) = 2e-20
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = +2
Query: 497 QLNAIYTYTGNILIAITPFHRLPHLYDTH 583
+LN IYTYTGNILIAI PF RLPHLYDTH
Sbjct: 87 ELNEIYTYTGNILIAINPFQRLPHLYDTH 115
>pir||A59310 unconventional myosin heavy chain - maize gi|4733891|gb|AAD17931.2|
unconventional myosin heavy chain [Zea mays]
Length = 1529
Score = 63.5 bits (153), Expect(2) = 6e-20
Identities = 43/100 (43%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Frame = +1
Query: 232 MSAPVNIIVGSHVWVEDPALTWIDGEFHSKSAVKKSMFAL--GMGKQLSKISQRFFPRIH 405
M PV IIVGSHVWVEDP L WIDGE S +K + + GK+++ + FP+
Sbjct: 1 MGTPVGIIVGSHVWVEDPNLAWIDGEVIS---IKNNEVHVQTSNGKKVTTDRSKVFPKDM 57
Query: 406 EASPGRC-GMT*QNCHICMQPGSLHNLAARYATQCNLYIY 522
EA PG MT +PG L NLA RY +Y Y
Sbjct: 58 EAPPGGVDDMT--RLSYLHEPGVLQNLATRYELN-EIYTY 94
Score = 55.5 bits (132), Expect(2) = 6e-20
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = +2
Query: 497 QLNAIYTYTGNILIAITPFHRLPHLYDTH 583
+LN IYTYTG+ILIA+ PF RLPHLYDTH
Sbjct: 87 ELNEIYTYTGSILIAVNPFQRLPHLYDTH 115
>ref|NP_197549.1| myosin-like protein; protein id: At5g20490.1 [Arabidopsis thaliana]
Length = 1544
Score = 59.7 bits (143), Expect(2) = 2e-19
Identities = 32/48 (66%), Positives = 36/48 (74%)
Frame = +3
Query: 315 LKISGEEVHVRTGNGKTVVKNISKVFPKDT*SLSWQVWHDMTKLSYLH 458
+KI+GEEVH T NGKTVV NI+ VFPKDT + V DMTKLSYLH
Sbjct: 42 VKINGEEVHAHTTNGKTVVANIANVFPKDTEAPPGGV-DDMTKLSYLH 88
Score = 57.4 bits (137), Expect(2) = 2e-19
Identities = 24/29 (82%), Positives = 26/29 (88%)
Frame = +2
Query: 497 QLNAIYTYTGNILIAITPFHRLPHLYDTH 583
+LN IYTYTGNILIA+ PF RLPHLYDTH
Sbjct: 101 ELNEIYTYTGNILIAVNPFQRLPHLYDTH 129
Score = 55.5 bits (132), Expect = 5e-07
Identities = 37/94 (39%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +1
Query: 244 VNIIVGSHVWVEDPALTWIDGEFHSKSAVKKSMFALGMGKQLSKISQRFFPRIHEASPGR 423
+NIIVGSHVW+EDP WIDGE + + GK + FP+ EA PG
Sbjct: 19 INIIVGSHVWIEDPGAAWIDGEVVKINGEEVHAHTTN-GKTVVANIANVFPKDTEAPPGG 77
Query: 424 C-GMT*QNCHICMQPGSLHNLAARYATQCNLYIY 522
MT +PG L+NLA RY +Y Y
Sbjct: 78 VDDMT--KLSYLHEPGVLNNLAMRYELN-EIYTY 108
>gb|AAL58953.1|AC091811_2 putative myosin [Oryza sativa]
Length = 1547
Score = 58.9 bits (141), Expect(2) = 4e-18
Identities = 40/98 (40%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Frame = +1
Query: 232 MSAPVNIIVGSHVWVEDPALTWIDGEFHSKSAVKKSMFALGMGKQLSKISQRFFPRIHEA 411
M PVNIIVGSHVW EDP WIDGE ++ + GK + +P+ EA
Sbjct: 1 MGTPVNIIVGSHVWAEDPDDAWIDGEVVEIRGGDATIVSTD-GKTIVASLASIYPKDTEA 59
Query: 412 SP-GRCGMT*QNCHICMQPGSLHNLAARYATQCNLYIY 522
P G MT +PG LHNLA RY +Y Y
Sbjct: 60 PPAGVDDMT--KLAYLHEPGVLHNLACRYGIN-EIYTY 94
Score = 53.9 bits (128), Expect(2) = 4e-18
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +2
Query: 500 LNAIYTYTGNILIAITPFHRLPHLYDTH 583
+N IYTYTGNILIA+ PF RLPHLYD H
Sbjct: 88 INEIYTYTGNILIAVNPFRRLPHLYDVH 115
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,145,575
Number of Sequences: 1393205
Number of extensions: 10875615
Number of successful extensions: 26660
Number of sequences better than 10.0: 160
Number of HSP's better than 10.0 without gapping: 25657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26581
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
