Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001233A_C01 KMC001233A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195572.1| putative protein; protein id: At4g38600.1 [Arab... 49 5e-05
pir||T06977 hypothetical protein Tap - wheat (fragment) gi|16676... 42 0.004
ref|NP_195908.1| putative protein; protein id: At5g02880.1 [Arab... 36 0.31
sp|P32228|VC04_SPVKA Protein C4 gi|347482|gb|AAC37867.1| ORF C4L 34 1.2
ref|NP_570166.1| SPV006 kelch-like protein [Swinepox virus] gi|1... 34 1.2
>ref|NP_195572.1| putative protein; protein id: At4g38600.1 [Arabidopsis thaliana]
gi|7485881|pir||T05688 hypothetical protein F20M13.160 -
Arabidopsis thaliana gi|4467147|emb|CAB37516.1| putative
protein [Arabidopsis thaliana]
gi|7270843|emb|CAB80524.1| putative protein [Arabidopsis
thaliana]
Length = 757
Score = 48.9 bits (115), Expect = 5e-05
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -3
Query: 581 YSTKEIMYKKLLYAISEXQGSFDLS 507
YSTKEIMYKKLLYAI+E QGSFDLS
Sbjct: 733 YSTKEIMYKKLLYAINEGQGSFDLS 757
>pir||T06977 hypothetical protein Tap - wheat (fragment)
gi|1667607|gb|AAB18822.1| Tap [Triticum aestivum]
Length = 94
Score = 42.4 bits (98), Expect = 0.004
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -3
Query: 581 YSTKEIMYKKLLYAISEXQGSFDLS 507
YSTKE+M KKLLYAI E +GSFDLS
Sbjct: 70 YSTKEVMRKKLLYAILEGRGSFDLS 94
>ref|NP_195908.1| putative protein; protein id: At5g02880.1 [Arabidopsis thaliana]
gi|11357909|pir||T48309 hypothetical protein F9G14.190 -
Arabidopsis thaliana gi|7413563|emb|CAB86042.1| putative
protein [Arabidopsis thaliana]
Length = 1502
Score = 36.2 bits (82), Expect = 0.31
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = -3
Query: 581 YSTKEIMYKKLLYAISEXQGSFDLS 507
YS+KE M +KL+YAI+E QGSF LS
Sbjct: 1478 YSSKEKMKEKLIYAITEGQGSFHLS 1502
>sp|P32228|VC04_SPVKA Protein C4 gi|347482|gb|AAC37867.1| ORF C4L
Length = 530
Score = 34.3 bits (77), Expect = 1.2
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 220 DSTIIYGKKEKKERNNERRAYNLSRT*LYSYIRTDLMDKNVSSPELSHNF 369
D IIY KK K N++ +LS LY+ IR + D ++SHNF
Sbjct: 190 DERIIYTKKLMKHINDQDHYTSLSDIELYNNIRERIYDNKEHDVDISHNF 239
>ref|NP_570166.1| SPV006 kelch-like protein [Swinepox virus]
gi|18448499|gb|AAL69745.1| SPV006 kelch-like protein
[Swinepox virus]
Length = 530
Score = 34.3 bits (77), Expect = 1.2
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 220 DSTIIYGKKEKKERNNERRAYNLSRT*LYSYIRTDLMDKNVSSPELSHNF 369
D IIY KK K N++ +LS LY+ IR + D ++SHNF
Sbjct: 190 DERIIYTKKLMKHINDQDHYTSLSDIELYNNIRERIYDNKEHDVDISHNF 239
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,277,929
Number of Sequences: 1393205
Number of extensions: 8267896
Number of successful extensions: 16234
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16219
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
