Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001232A_C01 KMC001232A_c01
(668 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P35939|RRPP_PHODV RNA polymerase alpha subunit (Nucleocapsid ... 41 0.017
pir||JQ1563 polymerase-associated nucleocapsid phosphoprotein - ... 41 0.017
sp|P35941|VV_PHODV Nonstructural protein V gi|476467|pir||JQ1565... 41 0.017
pir||JQ1610 nonstructural protein V - phocine distemper virus 41 0.017
ref|NP_198861.1| putative protein; protein id: At5g40450.1 [Arab... 39 0.064
>sp|P35939|RRPP_PHODV RNA polymerase alpha subunit (Nucleocapsid phosphoprotein)
gi|222248|dbj|BAA01203.1| P protein [Phocine distemper
virus]
Length = 507
Score = 40.8 bits (94), Expect = 0.017
Identities = 24/62 (38%), Positives = 38/62 (60%), Gaps = 5/62 (8%)
Frame = -2
Query: 469 TPTIQLDEVSDAIDDSRTPTVQSHQVSDVV-DDEITRDD----VQMMDHSEPDNCEEPAV 305
T +Q +E++ ID+S TPT +S+ VSDV+ +D+ R+D V+ D E D PAV
Sbjct: 48 TTGVQEEEITQNIDESHTPTKRSNSVSDVLQEDQRGREDNTAPVEAKDRIEEDTQTGPAV 107
Query: 304 KK 299
++
Sbjct: 108 RR 109
>pir||JQ1563 polymerase-associated nucleocapsid phosphoprotein - phocine
distemper virus gi|440571|emb|CAA53573.1| structural
viral protein [Phocine distemper virus]
Length = 507
Score = 40.8 bits (94), Expect = 0.017
Identities = 24/62 (38%), Positives = 38/62 (60%), Gaps = 5/62 (8%)
Frame = -2
Query: 469 TPTIQLDEVSDAIDDSRTPTVQSHQVSDVV-DDEITRDD----VQMMDHSEPDNCEEPAV 305
T +Q +E++ ID+S TPT +S+ VSDV+ +D+ R+D V+ D E D PAV
Sbjct: 48 TTGVQEEEITQNIDESHTPTKRSNSVSDVLQEDQRGREDNTAPVEAKDRIEEDTQTGPAV 107
Query: 304 KK 299
++
Sbjct: 108 RR 109
>sp|P35941|VV_PHODV Nonstructural protein V gi|476467|pir||JQ1565 nonstructural protein
V - phocine distemper virus (strain Ulster/88)
gi|60637|emb|CAA46485.1| phosphoprotein V protein
[Morbillivirus]
Length = 299
Score = 40.8 bits (94), Expect = 0.017
Identities = 24/62 (38%), Positives = 38/62 (60%), Gaps = 5/62 (8%)
Frame = -2
Query: 469 TPTIQLDEVSDAIDDSRTPTVQSHQVSDVV-DDEITRDD----VQMMDHSEPDNCEEPAV 305
T +Q +E++ ID+S TPT +S+ VSDV+ +D+ R+D V+ D E D PAV
Sbjct: 48 TTGVQEEEITQNIDESHTPTKRSNSVSDVLQEDQRGREDNTAPVEAKDRIEEDTQTGPAV 107
Query: 304 KK 299
++
Sbjct: 108 RR 109
>pir||JQ1610 nonstructural protein V - phocine distemper virus
Length = 299
Score = 40.8 bits (94), Expect = 0.017
Identities = 24/62 (38%), Positives = 38/62 (60%), Gaps = 5/62 (8%)
Frame = -2
Query: 469 TPTIQLDEVSDAIDDSRTPTVQSHQVSDVV-DDEITRDD----VQMMDHSEPDNCEEPAV 305
T +Q +E++ ID+S TPT +S+ VSDV+ +D+ R+D V+ D E D PAV
Sbjct: 48 TTGVQEEEITQNIDESHTPTKRSNSVSDVLQEDQRGREDNTAPVEAKDRIEEDTQTGPAV 107
Query: 304 KK 299
++
Sbjct: 108 RR 109
>ref|NP_198861.1| putative protein; protein id: At5g40450.1 [Arabidopsis thaliana]
Length = 2910
Score = 38.9 bits (89), Expect = 0.064
Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Frame = -2
Query: 664 HEASSLYEDDKGDKNCTSIKNVEHLSDITVSAAINLPIDSLVEISQHSNVCAGIKNGDQH 485
HE+ SL D+ +KN ++ ++L D A + + V+ + +++ I+ +
Sbjct: 1242 HESESLKGDNHQEKNAEPVEATQNLDD-----AEQISREVTVDTEREADITEKIEKVQEG 1296
Query: 484 PSCLETPTIQLD--------EVSDAIDDSRTPTVQSHQVSDVVDDEITRDDVQMMDHSEP 329
P+ +ETPTIQ + E+ + +D S T + H+ V++ +I + + + +
Sbjct: 1297 PTVIETPTIQGEDIESETSLELKEEVDQSSKDT-EEHE--HVLERDIPQCETLKAEAVDT 1353
Query: 328 DNCEEPAVKK 299
EE A+ K
Sbjct: 1354 STVEEAAILK 1363
Score = 32.0 bits (71), Expect = 7.8
Identities = 22/114 (19%), Positives = 53/114 (46%)
Frame = -2
Query: 664 HEASSLYEDDKGDKNCTSIKNVEHLSDITVSAAINLPIDSLVEISQHSNVCAGIKNGDQH 485
HE+ L ED+ ++ S++ ++ SD ++ + +D + ++ I+ +
Sbjct: 292 HESKILKEDNHQEEYAESVEATKN-SDAAEQSSREVTVDK----EKEEDIIQNIEEVQES 346
Query: 484 PSCLETPTIQLDEVSDAIDDSRTPTVQSHQVSDVVDDEITRDDVQMMDHSEPDN 323
PS +E+PTIQ +++ +S+ ++ + D ++ V + D P +
Sbjct: 347 PSVMESPTIQGEDI-----ESKASLDHEEEMDKITKDTEEQEHVLVRDVPVPQS 395
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,390,509
Number of Sequences: 1393205
Number of extensions: 10875265
Number of successful extensions: 25804
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 24727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25736
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
