Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001221A_C01 KMC001221A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_700973.1| asparagine-rich antigen [Plasmodium falciparum ... 34 0.87
gb|EAA17267.1| hypothetical protein [Plasmodium yoelii yoelii] 33 1.9
gb|AAO50861.1| similar to Xenopus laevis (African clawed frog). ... 32 4.3
gb|AAK54088.2|AF362369_1 histidine kinase DhkG [Dictyostelium di... 32 5.6
ref|NP_781320.1| hypothetical protein [Clostridium tetani E88] g... 31 9.6
>ref|NP_700973.1| asparagine-rich antigen [Plasmodium falciparum 3D7]
gi|23496035|gb|AAN35697.1|AE014837_39 asparagine-rich
antigen [Plasmodium falciparum 3D7]
Length = 1483
Score = 34.3 bits (77), Expect = 0.87
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +3
Query: 87 WNKSTDTNQKFINSTHA*QTTKQQHPKVSNSNKYRNNCNNSTTKAVPNVHK 239
+ K+ +TN+ F + + TK + ++N+N NN NN+ TK + ++K
Sbjct: 554 YKKNNNTNRNFNYNNNFANNTKNNNNNINNNNNNNNNNNNNNTKKIFMMNK 604
>gb|EAA17267.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1283
Score = 33.1 bits (74), Expect = 1.9
Identities = 19/60 (31%), Positives = 33/60 (54%), Gaps = 1/60 (1%)
Frame = +3
Query: 69 SVSWVVWNKSTDTNQKFINSTHA*QTTKQQHPKVSNSNKYRNN-CNNSTTKAVPNVHKYR 245
S S ++ NK+ D N K++ +TH TK+++ SNS K R+N + N H+++
Sbjct: 237 SYSIIIKNKNIDENFKYLINTH---ITKEENKGTSNSKKERDNIVLRGNVYKIANNHRFK 293
>gb|AAO50861.1| similar to Xenopus laevis (African clawed frog). Protein kinase C
and casein kinase substrate in neurons protein 2
(x-PACSIN2) [Dictyostelium discoideum]
Length = 533
Score = 32.0 bits (71), Expect = 4.3
Identities = 19/56 (33%), Positives = 26/56 (45%)
Frame = +3
Query: 153 QQHPKVSNSNKYRNNCNNSTTKAVPNVHKYRL*LILVLELFNKPSQSIEVTFTDSS 320
QQH + +N+N NN N TT P + L +L N P I ++ DSS
Sbjct: 344 QQHQQSNNNNNTNNNSNVMTTPPPPQPQPQQQQLPQPTQLNNPPQPPISLSKNDSS 399
>gb|AAK54088.2|AF362369_1 histidine kinase DhkG [Dictyostelium discoideum]
Length = 3432
Score = 31.6 bits (70), Expect = 5.6
Identities = 23/102 (22%), Positives = 40/102 (38%), Gaps = 14/102 (13%)
Frame = +3
Query: 90 NKSTDTNQKFINSTHA*QTTKQQHPKVSNSNKYRNNCNNSTTKAVPNVHKYR-------- 245
N ST N F+N + + ++N+N N CNN+ N++
Sbjct: 1019 NNSTSNNSTFLNC-NGNNNNNNNNFSINNNNNNNNGCNNNNNNNNNNINNNNNNNNNNNI 1077
Query: 246 ------L*LILVLELFNKPSQSIEVTFTDSSMQPKSQVMFKN 353
L +LV+ F + + E+ F D S +++ KN
Sbjct: 1078 NNSGGSLNYLLVIGAFRENEPNFELDFGDLSNFITMKIVLKN 1119
>ref|NP_781320.1| hypothetical protein [Clostridium tetani E88]
gi|28202813|gb|AAO35257.1| hypothetical protein
[Clostridium tetani E88]
Length = 178
Score = 30.8 bits (68), Expect = 9.6
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +3
Query: 90 NKSTDTNQKFINSTHA*QTTKQQHPKVSNSNKYRN----NCNNSTTKAVPNVHK 239
NKSTD+N K N+ +TK+Q N+N + N NN++TK + +K
Sbjct: 2 NKSTDSNLKQENTDTNNSSTKKQENADKNNNSTKKQENINKNNNSTKTPKDTNK 55
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,865,110
Number of Sequences: 1393205
Number of extensions: 9061070
Number of successful extensions: 29027
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 24033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28258
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
