Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001220A_C02 KMC001220A_c02
(490 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB93221.1| putative 60S RIBOSOMAL PROTEIN L36 [Oryza sativa... 183 8e-46
sp|Q9M352|R36B_ARATH 60S ribosomal protein L36-2 gi|11276884|pir... 180 9e-45
ref|NP_195865.1| 60S ribosomal protein - like; protein id: At5g0... 176 2e-43
ref|NP_181296.1| 60S ribosomal protein L36; protein id: At2g3760... 175 2e-43
ref|NP_566987.1| 60S RIBOSOMAL PROTEIN L36 homolog; protein id: ... 155 2e-37
>dbj|BAB93221.1| putative 60S RIBOSOMAL PROTEIN L36 [Oryza sativa (japonica
cultivar-group)]
Length = 110
Score = 183 bits (465), Expect = 8e-46
Identities = 92/111 (82%), Positives = 101/111 (90%)
Frame = +3
Query: 39 MAPKQPSTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 218
MAP QP +GLFVG+NKGHVVTK+EL PRPSDRKGK++KRV+FVR LIREV GFAPYEKRI
Sbjct: 1 MAPPQPKSGLFVGINKGHVVTKRELPPRPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRI 60
Query: 219 TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRSGGGAGDKKK 371
TELLKVGKDKRALKVAKRKLGTHKRAK+KREEM+ V+RKMRS G DKKK
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMRS-AGTTDKKK 110
>sp|Q9M352|R36B_ARATH 60S ribosomal protein L36-2 gi|11276884|pir||T45914 60S RIBOSOMAL
PROTEIN L36 homolog - Arabidopsis thaliana
gi|7629994|emb|CAB88336.1| 60S RIBOSOMAL PROTEIN L36
homolog [Arabidopsis thaliana]
gi|17065430|gb|AAL32869.1| 60S RIBOSOMAL PROTEIN L36
homolog [Arabidopsis thaliana]
gi|20148501|gb|AAM10141.1| 60S ribosomal protein
L36-like protein [Arabidopsis thaliana]
Length = 112
Score = 180 bits (456), Expect = 9e-45
Identities = 91/111 (81%), Positives = 98/111 (87%)
Frame = +3
Query: 39 MAPKQPSTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 218
M Q TGLFVGLNKGHVVT++ELAPRP RKGKTSKR F+R+LI+EVAG APYEKRI
Sbjct: 1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60
Query: 219 TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRSGGGAGDKKK 371
TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMS+VLRKMRSGGG +KK
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKK 111
>ref|NP_195865.1| 60S ribosomal protein - like; protein id: At5g02450.1, supported by
cDNA: 30903., supported by cDNA: gi_11908069, supported
by cDNA: gi_12642883, supported by cDNA: gi_13265482,
supported by cDNA: gi_16323203 [Arabidopsis thaliana]
gi|17865566|sp|Q9LZ57|R36C_ARATH 60S ribosomal protein
L36-3 gi|11276882|pir||T48266 60S ribosomal protein-like
- Arabidopsis thaliana gi|7413634|emb|CAB85982.1| 60S
ribosomal protein-like [Arabidopsis thaliana]
gi|11692870|gb|AAG40038.1|AF324687_1 AT5g02450
[Arabidopsis thaliana]
gi|11908070|gb|AAG41464.1|AF326882_1 putative 60S
ribosomal protein [Arabidopsis thaliana]
gi|12642884|gb|AAK00384.1|AF339702_1 putative 60S
ribosomal protein [Arabidopsis thaliana]
gi|16323204|gb|AAL15336.1| AT5g02450/T22P11_40
[Arabidopsis thaliana] gi|21592653|gb|AAM64602.1| 60S
ribosomal protein-like [Arabidopsis thaliana]
gi|22137218|gb|AAM91454.1| AT5g02450/T22P11_40
[Arabidopsis thaliana]
Length = 108
Score = 176 bits (445), Expect = 2e-43
Identities = 90/106 (84%), Positives = 99/106 (92%), Gaps = 1/106 (0%)
Frame = +3
Query: 57 STGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRITELLKV 236
+TGLFVGLNKGHVVTK+E PRP++RKGKTSKR F+R+LI+EVAG APYEKRITELLKV
Sbjct: 3 ATGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKV 62
Query: 237 GKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRSGG-GAGDKKK 371
GKDKRALKVAKRKLGTHKRAKRKREEMS+VLRKMRSGG GA +KKK
Sbjct: 63 GKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108
>ref|NP_181296.1| 60S ribosomal protein L36; protein id: At2g37600.1, supported by
cDNA: 23114., supported by cDNA: gi_15529193, supported
by cDNA: gi_16974366 [Arabidopsis thaliana]
gi|17865537|sp|O80929|R36A_ARATH 60S ribosomal protein
L36-1 gi|7441100|pir||T02526 60S ribosomal protein L36
[imported] - Arabidopsis thaliana
gi|3236242|gb|AAC23630.1| 60S ribosomal protein L36
[Arabidopsis thaliana] gi|15529194|gb|AAK97691.1|
At2g37600/F13M22.10 [Arabidopsis thaliana]
gi|16974367|gb|AAL31109.1| At2g37600/F13M22.10
[Arabidopsis thaliana] gi|21592383|gb|AAM64334.1| 60S
ribosomal protein L36-1 [Arabidopsis thaliana]
Length = 113
Score = 175 bits (444), Expect = 2e-43
Identities = 89/104 (85%), Positives = 95/104 (90%)
Frame = +3
Query: 60 TGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRITELLKVG 239
TGLFVGLNKGHVVT++ELAPRP+ RKGKTSKR F+R LIREVAG APYEKRITELLKVG
Sbjct: 8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67
Query: 240 KDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRSGGGAGDKKK 371
KDKRALKVAKRKLGTHKRAKRKREEMS+VLRKMRS GGA +K
Sbjct: 68 KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEK 111
>ref|NP_566987.1| 60S RIBOSOMAL PROTEIN L36 homolog; protein id: At3g53740.1,
supported by cDNA: 267357. [Arabidopsis thaliana]
gi|21554932|gb|AAM63733.1| 60S RIBOSOMAL PROTEIN L36
homolog [Arabidopsis thaliana]
Length = 103
Score = 155 bits (392), Expect = 2e-37
Identities = 82/111 (73%), Positives = 89/111 (79%)
Frame = +3
Query: 39 MAPKQPSTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 218
M Q TGLFVGLNKGHVVT++ELAPRP RKGKTSKR F+R+LI+EVAG APYEKRI
Sbjct: 1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60
Query: 219 TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRSGGGAGDKKK 371
TEL LKVAKRKLGTHKRAKRKREEMS+VLRKMRSGGG +KK
Sbjct: 61 TEL---------LKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKK 102
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,984,886
Number of Sequences: 1393205
Number of extensions: 8167449
Number of successful extensions: 24631
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 23416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24301
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
