Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001209A_C01 KMC001209A_c01
(618 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194200.1| putative protein; protein id: At4g24690.1, supp... 133 2e-30
ref|NP_493462.1| Human TFG related TFG-1 (49.7 kD) (tfg-1) [Caen... 44 0.002
ref|NP_594221.1| mating and morphogenesis protein Scd1p. [Schizo... 42 0.006
gb|AAO47735.1| MUC6 [Mus musculus] 39 0.070
emb|CAD54411.1| secreted gel-forming mucin [Mus musculus] 39 0.070
>ref|NP_194200.1| putative protein; protein id: At4g24690.1, supported by cDNA:
gi_17065501 [Arabidopsis thaliana]
gi|7452446|pir||T05565 hypothetical protein F22K18.110 -
Arabidopsis thaliana gi|4220521|emb|CAA22994.1| putative
protein [Arabidopsis thaliana]
gi|7269320|emb|CAB79379.1| putative protein [Arabidopsis
thaliana] gi|17065502|gb|AAL32905.1| putative protein
[Arabidopsis thaliana] gi|22136162|gb|AAM91159.1|
putative protein [Arabidopsis thaliana]
gi|22655264|gb|AAM98222.1| unknown protein [Arabidopsis
thaliana]
Length = 704
Score = 133 bits (334), Expect = 2e-30
Identities = 79/166 (47%), Positives = 104/166 (62%), Gaps = 6/166 (3%)
Frame = +1
Query: 139 LRAMESSLVIKVKYGDTLRRFNAPVAENNRLDLNMAGLRAKICSIFDFAADAKLILTYVD 318
+ + ++LV+KV YG LRRF PV N +LDL MAGL+ KI ++F+ +ADA+L LTY D
Sbjct: 1 MESTANALVVKVSYGGVLRRFRVPVKANGQLDLEMAGLKEKIAALFNLSADAELSLTYSD 60
Query: 319 EDGDSVTLVDDEDLLDVMRQKLKFLKIDVKMVNDNVGNSNFG--SSGSSTPLRSPPVSNP 492
EDGD V LVDD DL DV Q+LKFLKI+ VN V ++ SSGSSTP P NP
Sbjct: 61 EDGDVVALVDDNDLFDVTNQRLKFLKIN---VNAGVSTNSAAPESSGSSTPAGMP---NP 114
Query: 493 FAGGDFGKADVFDALPEPLREAL----CSSLSKAASSSPVLATLAD 618
+ G DV A+P P+R+ + SKA++SSPV+ + D
Sbjct: 115 VSKIQKGINDVLMAVPNPMRDTISKVYMDLASKASTSSPVVGEMLD 160
>ref|NP_493462.1| Human TFG related TFG-1 (49.7 kD) (tfg-1) [Caenorhabditis elegans]
gi|6580329|emb|CAB63398.1| C. elegans TFG-1 protein
(corresponding sequence Y63D3A.5) [Caenorhabditis
elegans]
Length = 486
Score = 43.9 bits (102), Expect = 0.002
Identities = 23/70 (32%), Positives = 38/70 (53%)
Frame = +1
Query: 154 SSLVIKVKYGDTLRRFNAPVAENNRLDLNMAGLRAKICSIFDFAADAKLILTYVDEDGDS 333
+S ++K ++ D +R+ + A DL + L + + +DA +L Y DE+GD
Sbjct: 9 TSTILKARHADVVRKTSLHHAN----DLTLIDLVLNVQRLLALPSDANFVLKYKDEEGDL 64
Query: 334 VTLVDDEDLL 363
VTL +D DLL
Sbjct: 65 VTLAEDSDLL 74
>ref|NP_594221.1| mating and morphogenesis protein Scd1p. [Schizosaccharomyces pombe]
gi|6094245|sp|P40995|SCD1_SCHPO Protein scd1
gi|7492166|pir||T37789 Scd1 protein - fission yeast
(Schizosaccharomyces pombe) gi|2330697|emb|CAB11037.1|
mating and morphogenesis protein Scd1p.
[Schizosaccharomyces pombe] gi|5296001|gb|AAA50556.2|
Scd1 protein [Schizosaccharomyces pombe]
Length = 872
Score = 42.0 bits (97), Expect = 0.006
Identities = 27/75 (36%), Positives = 36/75 (48%)
Frame = +1
Query: 139 LRAMESSLVIKVKYGDTLRRFNAPVAENNRLDLNMAGLRAKICSIFDFAADAKLILTYVD 318
LR E SLV+ V + T A V + K+C I A ++ L YVD
Sbjct: 779 LRLHEVSLVLVVAHDITFDELLAKVEH-----------KIKLCGILKQAVPFRVRLKYVD 827
Query: 319 EDGDSVTLVDDEDLL 363
EDGD +T+ DED+L
Sbjct: 828 EDGDFITITSDEDVL 842
>gb|AAO47735.1| MUC6 [Mus musculus]
Length = 2850
Score = 38.5 bits (88), Expect = 0.070
Identities = 22/82 (26%), Positives = 40/82 (47%)
Frame = -2
Query: 443 PKFELPTLSLTIFTSIFKNFNFCLITSSKSSSSTRVTESPSSSTYVKISFASAAKSKIEH 264
P F PT + T+ +S + SS+ +SST + + ++++V + ++KS H
Sbjct: 2617 PTFVSPTAASTVISSALPTIHMTPTPSSRPTSSTGLLSTSKTTSHVPTFSSFSSKSTTAH 2676
Query: 263 ILALSPAMLRSNLLFSATGALN 198
+ +L+ S LL S G N
Sbjct: 2677 LTSLTTQAATSGLLSSTMGMTN 2698
>emb|CAD54411.1| secreted gel-forming mucin [Mus musculus]
Length = 1414
Score = 38.5 bits (88), Expect = 0.070
Identities = 22/82 (26%), Positives = 40/82 (47%)
Frame = -2
Query: 443 PKFELPTLSLTIFTSIFKNFNFCLITSSKSSSSTRVTESPSSSTYVKISFASAAKSKIEH 264
P F PT + T+ +S + SS+ +SST + + ++++V + ++KS H
Sbjct: 1182 PTFVSPTAASTVISSALPTIHMTPTPSSRPTSSTGLLSTSKTTSHVPTFSSFSSKSTTAH 1241
Query: 263 ILALSPAMLRSNLLFSATGALN 198
+ +L+ S LL S G N
Sbjct: 1242 LTSLTTQAATSGLLSSTMGMTN 1263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,683,727
Number of Sequences: 1393205
Number of extensions: 12087194
Number of successful extensions: 55264
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 46486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52708
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
