Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001203A_C01 KMC001203A_c01
(913 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194308.1| putative pathogenesis-related protein; protein ... 236 3e-61
sp|Q40374|PR1_MEDTR Pathogenesis-related protein PR-1 precursor ... 176 4e-43
ref|NP_194309.1| putative pathogenesis-related protein; protein ... 174 2e-42
ref|NP_680450.1| similar to putative pathogenesis-related protei... 171 1e-41
ref|NP_194761.1| PR-1-like protein; protein id: At4g30320.1 [Ara... 160 2e-38
>ref|NP_194308.1| putative pathogenesis-related protein; protein id: At4g25780.1
[Arabidopsis thaliana] gi|7442180|pir||T04232
pathogenesis-related protein homolog F14M19.60 -
Arabidopsis thaliana gi|4539296|emb|CAB39599.1| putative
pathogenesis-related protein [Arabidopsis thaliana]
gi|7269429|emb|CAB79433.1| putative pathogenesis-related
protein [Arabidopsis thaliana]
gi|26449893|dbj|BAC42068.1| putative
pathogenesis-related protein [Arabidopsis thaliana]
Length = 190
Score = 236 bits (603), Expect = 3e-61
Identities = 96/154 (62%), Positives = 127/154 (82%)
Frame = +2
Query: 320 IYKVSKQLCWGCIGESLEFLFRHNMVRAAKWESPLMWDFQLQSYARWWAGQRKPDCKVEH 499
++++ K LC GC +SL+FLFRHN+VRAA++E PL+WD +LQ+YA+ WA QR+ DC + H
Sbjct: 37 VFRICKNLCPGCDHDSLQFLFRHNLVRAARFEPPLIWDRRLQNYAQGWANQRRGDCALRH 96
Query: 500 SFPENDFKLGENIFWGSGSAWTPTDAVKAWADEEKYYTYATNTCEEGQMCGHYTQIVWKN 679
S +F LGENI+WG G+ W+P DAV AWA E+++Y Y +NTC+ GQMCGHYTQIVWK+
Sbjct: 97 SVSNGEFNLGENIYWGYGANWSPADAVVAWASEKRFYHYGSNTCDAGQMCGHYTQIVWKS 156
Query: 680 TKRVGCARVVCDDGDVFMTCNYDPVGNYVGERPY 781
T+RVGCARVVCD+G +FMTCNYDP GNY+G++PY
Sbjct: 157 TRRVGCARVVCDNGGIFMTCNYDPPGNYIGQKPY 190
>sp|Q40374|PR1_MEDTR Pathogenesis-related protein PR-1 precursor gi|629627|pir||S47171
gene PR-1 protein - barrel medic
gi|505553|emb|CAA56174.1| PR-1 [Medicago truncatula]
Length = 173
Score = 176 bits (446), Expect = 4e-43
Identities = 79/138 (57%), Positives = 97/138 (70%), Gaps = 1/138 (0%)
Frame = +2
Query: 371 EFLFRHNMVRAAKWESPLMWDFQLQSYARWWAGQRKPDCKVEHSFPENDFKLGENIFWGS 550
+FL N+ RAA PL+WD +L YA+W+A QR+ DC +EHS + GENIFWGS
Sbjct: 40 QFLIPQNIARAAVGLRPLVWDDKLTHYAQWYANQRRNDCALEHS----NGPYGENIFWGS 95
Query: 551 GSAWTPTDAVKAWADEEKYYTYATNTCEEGQMCGHYTQIVWKNTKRVGCARVVC-DDGDV 727
G W P AV AW DE+++Y Y N+C +G+MCGHYTQ+VW +T +VGCA VVC DD
Sbjct: 96 GVGWNPAQAVSAWVDEKQFYNYWHNSCVDGEMCGHYTQVVWGSTTKVGCASVVCSDDKGT 155
Query: 728 FMTCNYDPVGNYVGERPY 781
FMTCNYDP GNY GERPY
Sbjct: 156 FMTCNYDPPGNYYGERPY 173
>ref|NP_194309.1| putative pathogenesis-related protein; protein id: At4g25790.1
[Arabidopsis thaliana] gi|7442181|pir||T04233
pathogenesis-related protein homolog F14M19.70 -
Arabidopsis thaliana gi|4539297|emb|CAB39600.1| putative
pathogenesis-related protein [Arabidopsis thaliana]
gi|7269430|emb|CAB79434.1| putative pathogenesis-related
protein [Arabidopsis thaliana]
Length = 210
Score = 174 bits (440), Expect = 2e-42
Identities = 80/138 (57%), Positives = 98/138 (70%), Gaps = 1/138 (0%)
Frame = +2
Query: 371 EFLFRHNMVRAAKWESPLMWDFQLQSYARWWAGQRKPDCKVEHSFPENDFKLGENIFWGS 550
+FL HN VR PL+WD ++ SYA WWA QR+ DC + HS GEN+FWGS
Sbjct: 77 QFLDPHNTVRGGLGLPPLVWDVKIASYATWWANQRRYDCSLTHSTGP----YGENLFWGS 132
Query: 551 GSAWTPTDAVKAWADEEKYYTYATNTCEEGQMCGHYTQIVWKNTKRVGCARVVCDDG-DV 727
GS +T T AV++W E K Y + TNTCE MCGHYTQIVW+ T+R+GCARVVC++G V
Sbjct: 133 GSDFTSTFAVESWTVEAKSYNHMTNTCEGDGMCGHYTQIVWRETRRLGCARVVCENGAGV 192
Query: 728 FMTCNYDPVGNYVGERPY 781
F+TCNYDP GNYVGE+PY
Sbjct: 193 FITCNYDPPGNYVGEKPY 210
>ref|NP_680450.1| similar to putative pathogenesis-related protein; protein id:
At5g57625.1 [Arabidopsis thaliana]
gi|9758324|dbj|BAB08798.1| contains similarity to
pathogenesis-related protein~gene_id:MUA2.21
[Arabidopsis thaliana] gi|28058747|gb|AAO29948.1|
Unknown protein [Arabidopsis thaliana]
Length = 207
Score = 171 bits (434), Expect = 1e-41
Identities = 77/137 (56%), Positives = 99/137 (72%), Gaps = 1/137 (0%)
Frame = +2
Query: 374 FLFRHNMVRAAKWESPLMWDFQLQSYARWWAGQRKPDCKVEHSFPENDFKLGENIFWGSG 553
FL HN +R+ PL+WD +L SYA WWA QR+ DC + HS GEN+FWGSG
Sbjct: 75 FLDPHNALRSGLGLPPLIWDGKLASYATWWANQRRYDCSLTHSTGP----YGENLFWGSG 130
Query: 554 SAWTPTDAVKAWADEEKYYTYATNTCEEGQMCGHYTQIVWKNTKRVGCARVVCDDG-DVF 730
S+W P AV++W E + Y + TN+C+ MCGHYTQ+VW++TKR+GCARVVC++G VF
Sbjct: 131 SSWAPGFAVQSWIVEGRSYNHNTNSCDGSGMCGHYTQMVWRDTKRLGCARVVCENGAGVF 190
Query: 731 MTCNYDPVGNYVGERPY 781
+TCNYDP GNYVGE+PY
Sbjct: 191 ITCNYDPPGNYVGEKPY 207
>ref|NP_194761.1| PR-1-like protein; protein id: At4g30320.1 [Arabidopsis thaliana]
gi|25296208|pir||E85354 PR-1-like protein [imported] -
Arabidopsis thaliana gi|7269932|emb|CAB81025.1|
PR-1-like protein [Arabidopsis thaliana]
Length = 161
Score = 160 bits (405), Expect = 2e-38
Identities = 71/147 (48%), Positives = 94/147 (63%), Gaps = 1/147 (0%)
Frame = +2
Query: 344 CWGCIGESLEFLFRHNMVRAAKWESPLMWDFQLQSYARWWAGQRKPDCKVEHSFPENDFK 523
C C +F+ N RA PL WD +L YA+WWA QR+ DC + HS +
Sbjct: 20 CCHCATYQEQFMGPQNAARAHLRLKPLKWDAKLARYAQWWANQRRGDCALTHS----NGP 75
Query: 524 LGENIFWGSGSAWTPTDAVKAWADEEKYYTYATNTCEEGQMCGHYTQIVWKNTKRVGCAR 703
GEN+FWGSG+ W P+ A W E + Y Y +N+C +MCGHYTQIVWKNT+++GCA
Sbjct: 76 YGENLFWGSGNRWGPSQAAYGWLSEARSYNYRSNSCNS-EMCGHYTQIVWKNTQKIGCAH 134
Query: 704 VVCD-DGDVFMTCNYDPVGNYVGERPY 781
V+C+ G VF+TCNYDP GN++G +PY
Sbjct: 135 VICNGGGGVFLTCNYDPPGNFLGRKPY 161
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 842,650,060
Number of Sequences: 1393205
Number of extensions: 20166305
Number of successful extensions: 49378
Number of sequences better than 10.0: 327
Number of HSP's better than 10.0 without gapping: 46438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48942
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 49918505760
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
