Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001201A_C01 KMC001201A_c01
(481 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB37301.1| Menkes disease gene product [Mus musculus] 31 0.31
sp|Q64430|AT7A_MOUSE Copper-transporting ATPase 1 (Copper pump 1... 31 0.31
pir||S43793 copper-transporting ATPase (EC 3.6.1.-) - mouse gi|4... 31 0.31
ref|NP_033856.1| ATPase, Cu++ transporting, alpha polypeptide; M... 31 0.31
gb|AAB08487.1| putative copper efflux ATPase 31 0.31
>gb|AAB37301.1| Menkes disease gene product [Mus musculus]
Length = 1492
Score = 31.2 bits (69), Expect(2) = 0.31
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 184 REIKQGAGLFLATLSFSILPVGIVLLEMHQDHYV 285
REIKQ G FL +L F I +G+++ M DH++
Sbjct: 637 REIKQWRGSFLVSLFFCIPVMGLMVYMMVMDHHL 670
Score = 23.1 bits (48), Expect(2) = 0.31
Identities = 7/19 (36%), Positives = 13/19 (67%)
Frame = +3
Query: 363 LERFHHNKDLSNSRVMDAH 419
L HHN+++SN +++ H
Sbjct: 670 LATLHHNQNMSNEEMINMH 688
>sp|Q64430|AT7A_MOUSE Copper-transporting ATPase 1 (Copper pump 1) (Menkes
disease-associated protein homolog)
Length = 1491
Score = 31.2 bits (69), Expect(2) = 0.31
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 184 REIKQGAGLFLATLSFSILPVGIVLLEMHQDHYV 285
REIKQ G FL +L F I +G+++ M DH++
Sbjct: 636 REIKQWRGSFLVSLFFCIPVMGLMVYMMVMDHHL 669
Score = 23.1 bits (48), Expect(2) = 0.31
Identities = 7/19 (36%), Positives = 13/19 (67%)
Frame = +3
Query: 363 LERFHHNKDLSNSRVMDAH 419
L HHN+++SN +++ H
Sbjct: 669 LATLHHNQNMSNEEMINMH 687
>pir||S43793 copper-transporting ATPase (EC 3.6.1.-) - mouse
gi|451487|gb|AAA57445.1| Cu++-transporting P-type ATPase
Length = 1491
Score = 31.2 bits (69), Expect(2) = 0.31
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 184 REIKQGAGLFLATLSFSILPVGIVLLEMHQDHYV 285
REIKQ G FL +L F I +G+++ M DH++
Sbjct: 636 REIKQWRGSFLVSLFFCIPVMGLMVYMMVMDHHL 669
Score = 23.1 bits (48), Expect(2) = 0.31
Identities = 7/19 (36%), Positives = 13/19 (67%)
Frame = +3
Query: 363 LERFHHNKDLSNSRVMDAH 419
L HHN+++SN +++ H
Sbjct: 669 LATLHHNQNMSNEEMINMH 687
>ref|NP_033856.1| ATPase, Cu++ transporting, alpha polypeptide; Menkes protein; DNA
segment, Chr X, 1608 expressed [Mus musculus]
gi|2440287|dbj|BAA22369.1| Cu++-tranporting P-type
ATPase [Mus musculus]
Length = 1491
Score = 31.2 bits (69), Expect(2) = 0.31
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 184 REIKQGAGLFLATLSFSILPVGIVLLEMHQDHYV 285
REIKQ G FL +L F I +G+++ M DH++
Sbjct: 636 REIKQWRGSFLVSLFFCIPVMGLMVYMMVMDHHL 669
Score = 23.1 bits (48), Expect(2) = 0.31
Identities = 7/19 (36%), Positives = 13/19 (67%)
Frame = +3
Query: 363 LERFHHNKDLSNSRVMDAH 419
L HHN+++SN +++ H
Sbjct: 669 LATLHHNQNMSNEEMINMH 687
>gb|AAB08487.1| putative copper efflux ATPase
Length = 1465
Score = 31.2 bits (69), Expect(2) = 0.31
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 184 REIKQGAGLFLATLSFSILPVGIVLLEMHQDHYV 285
REIKQ G FL +L F I +G+++ M DH++
Sbjct: 610 REIKQWRGSFLVSLFFCIPVMGLMVYMMVMDHHL 643
Score = 23.1 bits (48), Expect(2) = 0.31
Identities = 7/19 (36%), Positives = 13/19 (67%)
Frame = +3
Query: 363 LERFHHNKDLSNSRVMDAH 419
L HHN+++SN +++ H
Sbjct: 643 LATLHHNQNMSNEEMINMH 661
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,062,525
Number of Sequences: 1393205
Number of extensions: 10300636
Number of successful extensions: 23842
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23840
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
