Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001199A_C01 KMC001199A_c01
(578 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177149.1| putative protein kinase; protein id: At1g69910.... 32 4.4
gb|ZP_00097520.1| hypothetical protein [Desulfitobacterium hafni... 32 5.7
ref|XP_157956.2| hypothetical protein XP_157956 [Mus musculus] 32 7.5
>ref|NP_177149.1| putative protein kinase; protein id: At1g69910.1 [Arabidopsis
thaliana] gi|25404853|pir||E96721 hypothetical protein
T17F3.6 [imported] - Arabidopsis thaliana
gi|12325225|gb|AAG52555.1|AC010675_3 putative protein
kinase; 23181-21271 [Arabidopsis thaliana]
Length = 625
Score = 32.3 bits (72), Expect = 4.4
Identities = 23/83 (27%), Positives = 35/83 (41%), Gaps = 6/83 (7%)
Frame = +1
Query: 1 PFQSHPKYPMQLELNIKHNNLLVSIFLCPM*NTNATFSIKQIEFYYIRYVQVNCG*TELL 180
PF S P YP H N + ++ AT +IK + F + Y ++ + L
Sbjct: 38 PFNSSPPYPFSASPGCGHPNFQIQCS-----SSRATITIKNLTFSILHYSSIS---SSLT 89
Query: 181 LSPTGST------CRTQQLSSMP 231
LSP +T C + + SS P
Sbjct: 90 LSPITNTNRNTNNCSSLRFSSSP 112
>gb|ZP_00097520.1| hypothetical protein [Desulfitobacterium hafniense]
Length = 207
Score = 32.0 bits (71), Expect = 5.7
Identities = 15/36 (41%), Positives = 20/36 (54%)
Frame = -3
Query: 291 DGEHQLACC*SESCKSYSVPWHGTKLLCSACGSRWA 184
DG+ +A E C S S G KL+C+AC + WA
Sbjct: 130 DGKAIVAVSICEPCNSDSFRIEGKKLVCNACNTTWA 165
>ref|XP_157956.2| hypothetical protein XP_157956 [Mus musculus]
Length = 318
Score = 31.6 bits (70), Expect = 7.5
Identities = 28/128 (21%), Positives = 47/128 (35%), Gaps = 20/128 (15%)
Frame = +3
Query: 12 PSEIPNAVRTEYQTQQPPRFHFFMSYVKYKCYILH*ANRVLLHQICTSKLWLNRATTKP- 188
P P + ++Q ++P + + ++ ++ NRV + Q+ + WL R P
Sbjct: 176 PLPAPISENLKFQFKRPTEYFSCTTETIFES--IYVVNRVEIFQLALTSFWLPRRFINPA 233
Query: 189 -------NGIHMQNTTT*FHAMEQNNSCTILIN------------NKQVDVLHRPIPAPC 311
G H T N C L++ +K+ D + R P C
Sbjct: 234 GKDWGIFQGFHPNGFTENLLLDGLNTECKALMSAVLLIEVPYGNSHKRYDKMTRKCPLRC 293
Query: 312 *CKKNREF 335
C K REF
Sbjct: 294 GCLKKREF 301
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,924,281
Number of Sequences: 1393205
Number of extensions: 10635374
Number of successful extensions: 21580
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21578
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
