Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001195A_C01 KMC001195A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA35924.1| predicted protein [Neurospora crassa] 34 1.5
gb|ZP_00037916.1| hypothetical protein [Enterococcus faecium] 33 2.6
ref|NP_647168.1| ORFID:MW2351~hypothetical protein, similar to A... 33 3.4
ref|NP_372952.1| hypothetical protein [Staphylococcus aureus sub... 33 3.4
ref|NP_624984.1| conserved hypothetical protein SCF91.35. [Strep... 32 5.8
>gb|EAA35924.1| predicted protein [Neurospora crassa]
Length = 641
Score = 33.9 bits (76), Expect = 1.5
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 393 PSGMPAPFGLPPNYYGATGGADYFCHP-RPYPP 298
P+ PAP PP YGA GA Y P +PYPP
Sbjct: 221 PAQPPAPAPYPPQSYGAPHGAPYAPAPYQPYPP 253
>gb|ZP_00037916.1| hypothetical protein [Enterococcus faecium]
Length = 511
Score = 33.1 bits (74), Expect = 2.6
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -3
Query: 435 LPRVFTSHYQHTFCPSGMPAPFGLPPNYYGATGGAD 328
LP+VF S YQ T PS A GLP + GGAD
Sbjct: 204 LPQVFPSTYQVTGLPSKTAAELGLPNDISFVLGGAD 239
>ref|NP_647168.1| ORFID:MW2351~hypothetical protein, similar to ABC transporter,
ATP-binding protein [Staphylococcus aureus subsp. aureus
MW2] gi|21205523|dbj|BAB96216.1| MW2351 [Staphylococcus
aureus subsp. aureus MW2]
Length = 577
Score = 32.7 bits (73), Expect = 3.4
Identities = 20/79 (25%), Positives = 35/79 (43%), Gaps = 4/79 (5%)
Frame = -1
Query: 545 LSNLRRRNVLLKQCPMIINYISGVSTTNVLGQVQHTLCLVSSLLITNIPFVLVECL---- 378
+ + + N LK +N ++T + + L + SL + +I VLV CL
Sbjct: 211 IKSFAKENTSLKSFNQAVNESKRINTKIEMQYIPFNLLHLLSLKVVSIMIVLVACLLYMN 270
Query: 377 HRLDFPQTIMVLLAEQITF 321
H +D P IM+ + + F
Sbjct: 271 HSIDLPTLIMISIFSFVIF 289
>ref|NP_372952.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
gi|15928006|ref|NP_375539.1| hypothetical protein,
similar to ABC transporter, ATP-binding protein
[Staphylococcus aureus subsp. aureus N315]
gi|25297497|pir||E90044 hypothetical protein SA2216
[imported] - Staphylococcus aureus (strain N315)
gi|13702377|dbj|BAB43518.1| SA2216 [Staphylococcus
aureus subsp. aureus N315] gi|14248202|dbj|BAB58590.1|
hypothetical protein [Staphylococcus aureus subsp.
aureus Mu50]
Length = 577
Score = 32.7 bits (73), Expect = 3.4
Identities = 20/79 (25%), Positives = 35/79 (43%), Gaps = 4/79 (5%)
Frame = -1
Query: 545 LSNLRRRNVLLKQCPMIINYISGVSTTNVLGQVQHTLCLVSSLLITNIPFVLVECL---- 378
+ + + N LK +N ++T + + L + SL + +I VLV CL
Sbjct: 211 IKSFAKENTSLKSFNQAVNESKRINTKIEMQYIPFNLLHLLSLKVVSIMIVLVACLLYMN 270
Query: 377 HRLDFPQTIMVLLAEQITF 321
H +D P IM+ + + F
Sbjct: 271 HSIDLPTLIMISIFSFVIF 289
>ref|NP_624984.1| conserved hypothetical protein SCF91.35. [Streptomyces coelicolor
A3(2)] gi|6434745|emb|CAB61192.1| conserved hypothetical
protein SCF91.35. [Streptomyces coelicolor A3(2)]
Length = 884
Score = 32.0 bits (71), Expect = 5.8
Identities = 16/44 (36%), Positives = 22/44 (49%)
Frame = -1
Query: 320 VTLGLTHLSDDLVQCAFIACLVCRWEPYNHLGAASRVLYPPPIL 189
V G+ HL DL F +C R +P A+R +PPP+L
Sbjct: 725 VMSGVNHLLADLDPGLFASCCYIRLDPATGRACAARAGHPPPLL 768
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,103,834
Number of Sequences: 1393205
Number of extensions: 11947976
Number of successful extensions: 27536
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 26325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27478
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
