Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001187A_C01 KMC001187A_c01
(720 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_502220.1| Predicted CDS, putative prenylated protein, nem... 34 1.8
gb|AAC38978.1| cytochrome c oxidase subunit 1 [Bodo saltans] 33 3.1
dbj|BAA25153.1| Pns10-2 [Oat sterile dwarf virus] 32 6.8
gb|ZP_00109097.1| hypothetical protein [Nostoc punctiforme] 32 8.9
gb|EAA17086.1| hypothetical protein [Plasmodium yoelii yoelii] 32 8.9
>ref|NP_502220.1| Predicted CDS, putative prenylated protein, nematode specific
[Caenorhabditis elegans] gi|7505049|pir||T23161
hypothetical protein K01A6.3 - Caenorhabditis elegans
gi|3878085|emb|CAA92966.1| Hypothetical protein K01A6.3
[Caenorhabditis elegans]
Length = 320
Score = 34.3 bits (77), Expect = 1.8
Identities = 26/84 (30%), Positives = 38/84 (44%)
Frame = -2
Query: 293 FFFFFLTFQSSHHPRSILDDPLQPLHQLGAYHLVIRAPVLGFWFLFLSGILVCNSLSFLV 114
FFFFF+ F S D H+ A V ++P+LG+ FLF S N+ +
Sbjct: 230 FFFFFIFFSLSKSFPEHDDRTYVYPHRNTANECVGQSPILGYLFLFFSMFYYYNNYYYFY 289
Query: 113 TLIFSFCFFWLNHCQS*ALLIVQN 42
I S F + H +S +VQ+
Sbjct: 290 ASIPSHFFSNILHVRSCPSPVVQS 313
>gb|AAC38978.1| cytochrome c oxidase subunit 1 [Bodo saltans]
Length = 548
Score = 33.5 bits (75), Expect = 3.1
Identities = 16/46 (34%), Positives = 23/46 (49%)
Frame = -2
Query: 224 PLHQLGAYHLVIRAPVLGFWFLFLSGILVCNSLSFLVTLIFSFCFF 87
P+H LG Y R FLF S +L+C L + ++F+ C F
Sbjct: 429 PIHSLGLYAFPRRISDYPISFLFWSYVLLCGMLFLVCLVLFAACLF 474
>dbj|BAA25153.1| Pns10-2 [Oat sterile dwarf virus]
Length = 194
Score = 32.3 bits (72), Expect = 6.8
Identities = 13/27 (48%), Positives = 20/27 (73%), Gaps = 1/27 (3%)
Frame = -2
Query: 158 FLSGILVCNSLS-FLVTLIFSFCFFWL 81
+L G+++CN S L++ +FSFCFF L
Sbjct: 96 YLLGLIICNRFSRLLISTVFSFCFFVL 122
>gb|ZP_00109097.1| hypothetical protein [Nostoc punctiforme]
Length = 798
Score = 32.0 bits (71), Expect = 8.9
Identities = 19/48 (39%), Positives = 24/48 (49%)
Frame = -1
Query: 306 FHHEILLLLSHISEFSSSKINPRRSIAALASTWGVSFGNQSSGSRILV 163
+HH I LLL+H K P IA+LA WG + +Q G LV
Sbjct: 290 YHHSISLLLAH-----EDKTYPGALIASLAIPWGEAKDDQDQGGYHLV 332
>gb|EAA17086.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 768
Score = 32.0 bits (71), Expect = 8.9
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 317 QKRGEVLVKWKMKTSHKGGDKPLISLILESLKNYENHSHKSESLRKENTNSFI 475
+K+ E KW+ K G D + + N +N HK ES+ N NS +
Sbjct: 195 EKKAEACEKWEKKAEACGDDSKRVGNLCNVQSNIQNDDHK-ESIVTNNNNSLV 246
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 564,813,244
Number of Sequences: 1393205
Number of extensions: 11699959
Number of successful extensions: 31724
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 30630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31701
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33499052993
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
