Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001186A_C01 KMC001186A_c01
(1837 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus] 462 0.0
ref|NP_564554.1| polyadenylate-binding protein (PABP), putative;... 422 e-174
ref|NP_195137.1| polyadenylate-binding protein 2 (PABP2); protei... 404 e-157
gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis tha... 404 e-157
gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota] 451 e-125
>gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 462 bits (1189), Expect(2) = 0.0
Identities = 241/350 (68%), Positives = 279/350 (78%), Gaps = 3/350 (0%)
Frame = -1
Query: 1837 HKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFETEEAAQNAIEKLNGMLLNDKQVYV 1658
HKALHDTFS FG+ILSCKVATDSSGQSKG+GFVQF+TEEAA AIEKLNGMLLNDKQV+V
Sbjct: 130 HKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFV 189
Query: 1657 GPFLRKQERESSTDKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSACCNEGWGWEIKV 1478
GPFLRKQERES ++K KFNNVFVKNL+E+T++++LKN+FGEFG ITS + K
Sbjct: 190 GPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKC 249
Query: 1477 LWICEL*EC**CC*SC*VS*WEKG**PGTGMLEKLKRNLKGSQTLKNKFERAMKEAADKY 1298
S +K + K ++ + LK++FE+++KEAADKY
Sbjct: 250 FGFVNFENADDAARSVEALNGKKVD-GKEWYVGKAQKKSEREVELKSRFEQSVKEAADKY 308
Query: 1297 QGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGISRGSGFVAFSTPEEASRAL 1118
QGANLYVKNLDDSI D+KLKELF+ +GTITSCKVMRDPNGISRGSGFVAFS+PEEA+RAL
Sbjct: 309 QGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARAL 368
Query: 1117 LEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPP--APR-VPMYPPGGPGIG 947
EMNG+M+VSKPLYV LAQRKEDR ARLQAQF+QM+P+AM APR +PMYPPGGPGIG
Sbjct: 369 AEMNGRMIVSKPLYVALAQRKEDRIARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIG 428
Query: 946 QQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFMPMVPPGTTG 797
QQIFYGQ PP II SQPGFGYQQQL+PGMRPGG P+PNFF+PMV G G
Sbjct: 429 QQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQG 478
Score = 271 bits (693), Expect(2) = 0.0
Identities = 137/175 (78%), Positives = 154/175 (87%), Gaps = 5/175 (2%)
Frame = -2
Query: 822 PWFRQGQQGQRPGGRRAGAVQQSQQPVPLMPQQMLPRGRVYRYPPGRGMPEVPMPGVAGG 643
P +QGQQGQR GGRRAGA+QQ+QQPVPLM QQMLPRGRVYRYPPGRG+P++PMPGVAGG
Sbjct: 470 PMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGG 529
Query: 642 MFSVPYDVSGMPLRDGSLSQQIPVGALASALANASPEQQRTMLGENLYPLVEQLEPDNAA 463
MFSVPY++ GMP RD Q +PVGALASALANA+P+QQRTMLGENLYPLVEQLEPDNAA
Sbjct: 530 MFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAA 589
Query: 462 QVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRTC-----RAARRLAVLLIS 313
+VTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLR+ AA +LA L ++
Sbjct: 590 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQSGNAADQLASLSLT 644
Score = 111 bits (278), Expect = 3e-23
Identities = 86/285 (30%), Positives = 137/285 (47%), Gaps = 14/285 (4%)
Frame = -1
Query: 1828 LHDTFSTFGNILSCKVATD-SSGQSKGYGFVQFETEEAAQNAIEKLNGMLLNDKQVYVGP 1652
L+D F+ G ++S +V D +S +S GYG+V + A A++ LN LN + V
Sbjct: 45 LYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRV-- 102
Query: 1651 FLRKQERESSTDKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSACC-------NEGWG 1493
R+ S K+ N+F+KNL ++ L + F FG+I S ++G+G
Sbjct: 103 --MYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFG 160
Query: 1492 W------EIKVLWICEL*EC**CC*SC*VS*WEKG**PGTGMLEKLKRNLKGSQTLKNKF 1331
+ E + I +L GML K+ G K +
Sbjct: 161 FVQFDTEEAALKAIEKL----------------------NGMLLNDKQVFVGPFLRKQER 198
Query: 1330 ERAMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGISRGSGFVA 1151
E ++K + N++VKNL ++ ++E LK +F +G ITS VMRD G S+ GFV
Sbjct: 199 E----SVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVN 254
Query: 1150 FSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQ 1016
F ++A+R++ +NGK V K YV AQ+K +R L+++F Q
Sbjct: 255 FENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQ 299
Score = 79.0 bits (193), Expect = 2e-13
Identities = 37/49 (75%), Positives = 43/49 (87%)
Frame = -2
Query: 1512 VVMRDGDGKSKCFGFVNFENADDAARAVESLNGKKVDDQELVCWKSSKE 1366
VVMRDG+GKSKCFGFVNFENADDAAR+VE+LNGKKVD +E K+ K+
Sbjct: 238 VVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKK 286
Score = 72.8 bits (177), Expect(2) = 1e-13
Identities = 35/88 (39%), Positives = 57/88 (64%)
Frame = -1
Query: 1303 KYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGISRGSGFVAFSTPEEASR 1124
K N+++KNLD +I + L + FS++G+I SCKV D +G S+G GFV F T E A +
Sbjct: 113 KSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALK 172
Query: 1123 ALLEMNGKMVVSKPLYVTLAQRKEDRRA 1040
A+ ++NG ++ K ++V RK++R +
Sbjct: 173 AIEKLNGMLLNDKQVFVGPFLRKQERES 200
Score = 52.0 bits (123), Expect = 3e-05
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = -1
Query: 1324 AMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRD-PNGISRGSGFVAF 1148
A A+++ +LYV +LD ++ D +L +LF+ G + S +V RD + S G G+V +
Sbjct: 18 AANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNY 77
Query: 1147 STPEEASRALLEMNGKMVVSKPLYVTLAQR 1058
S P +ASRAL +N + P+ V + R
Sbjct: 78 SNPVDASRALDVLNFTPLNGNPIRVMYSHR 107
Score = 40.0 bits (92), Expect = 0.13
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = -2
Query: 1509 VMRDGDGKSKCFGFVNFENADDAARAVESLNGKKVDDQEL 1390
V D G+SK FGFV F+ + A +A+E LNG ++D+++
Sbjct: 148 VATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQV 187
Score = 37.0 bits (84), Expect = 1.1
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = -3
Query: 1421 LMGKRLMTRNWYVGKAQKKSERE 1353
L GK++ + WYVGKAQKKSERE
Sbjct: 268 LNGKKVDGKEWYVGKAQKKSERE 290
Score = 36.6 bits (83), Expect = 1.4
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = -2
Query: 1509 VMRDGDGKSKCFGFVNFENADDAARAVESLNGKKVDDQEL 1390
VMRD +G S+ GFV F + ++AARA+ +NG+ + + L
Sbjct: 342 VMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPL 381
Score = 27.3 bits (59), Expect(2) = 1e-13
Identities = 11/24 (45%), Positives = 18/24 (74%)
Frame = -2
Query: 1488 KSKCFGFVNFENADDAARAVESLN 1417
+S +G+VN+ N DA+RA++ LN
Sbjct: 68 RSLGYGYVNYSNPVDASRALDVLN 91
>ref|NP_564554.1| polyadenylate-binding protein (PABP), putative; protein id:
At1g49760.1, supported by cDNA: gi_13877632, supported by
cDNA: gi_17978684 [Arabidopsis thaliana]
gi|25294313|pir||C96534 probable Poly-A Binding Protein
[imported] - Arabidopsis thaliana
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A
Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A
Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding
Protein [Arabidopsis thaliana]
Length = 671
Score = 422 bits (1086), Expect(3) = e-174
Identities = 222/354 (62%), Positives = 261/354 (73%), Gaps = 10/354 (2%)
Frame = -1
Query: 1837 HKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFETEEAAQNAIEKLNGMLLNDKQVYV 1658
HKALH+TFS FG ILSCKVA D SGQSKGYGFVQ++T+EAAQ AI+KLNGMLLNDKQVYV
Sbjct: 146 HKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Query: 1657 GPFLRKQERESSTDKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSACCNEGWGWEIKV 1478
GPF+ K +R+ S +K KF NV+VKNLSES +D+EL VFGEFG TS + K
Sbjct: 206 GPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKG 265
Query: 1477 LWICEL*EC**CC*SC*VS*WEKG**PGTGMLEKLKRNLKGSQTLKNKFERAMK------ 1316
+ G K G K++ E +K
Sbjct: 266 FGFVNFENSDDAARAVDAL---------NGKTFDDKEWFVGKAQKKSERETELKQKFEQS 316
Query: 1315 --EAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGISRGSGFVAFST 1142
EAADK QG+NLYVKNLD+S+ D+KL+E F+ +GTITSCKVMRDP+G+SRGSGFVAFST
Sbjct: 317 LKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFST 376
Query: 1141 PEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPA--PRVPMYP 968
PEEA+RA+ EMNGKM+V+KPLYV LAQRKEDR+ARLQAQF+QMRPV MPPA PR+ MYP
Sbjct: 377 PEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYP 436
Query: 967 PGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFMPMVPPG 806
PGGP +GQQ+FYGQGPPA+IP QPGFGYQQQLVPGMRPGG+P+PNFFMPM+ G
Sbjct: 437 PGGPPMGQQLFYGQGPPAMIP-QPGFGYQQQLVPGMRPGGSPMPNFFMPMMQQG 489
Score = 201 bits (511), Expect(3) = e-174
Identities = 109/157 (69%), Positives = 122/157 (77%), Gaps = 3/157 (1%)
Frame = -2
Query: 813 RQGQQGQRPGGRRAGAVQQSQQPVPLMPQQMLPRGRVYRYPPGRGMPEVPMPGVAGGMFS 634
+Q QQ QRPGG R GA+ Q QQP P+M QQM PRGR+YRYP MPG M S
Sbjct: 494 QQQQQQQRPGGGRRGALPQPQQPSPMMQQQMHPRGRMYRYPQ---RDVNTMPGPTQNMLS 550
Query: 633 VPYDVS---GMPLRDGSLSQQIPVGALASALANASPEQQRTMLGENLYPLVEQLEPDNAA 463
VPYDVS G+ RD SQ +P+ ALA+ LANA+PEQQRTMLGENLYPLVEQLEP++AA
Sbjct: 551 VPYDVSSGGGVHHRDSPTSQPVPIVALATRLANAAPEQQRTMLGENLYPLVEQLEPESAA 610
Query: 462 QVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRT 352
+VTGMLLEMDQTEVLHLLESPEALKAKV EAMDVLR+
Sbjct: 611 KVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRS 647
Score = 121 bits (303), Expect = 4e-26
Identities = 85/282 (30%), Positives = 138/282 (48%), Gaps = 11/282 (3%)
Frame = -1
Query: 1828 LHDTFSTFGNILSCKVATD-SSGQSKGYGFVQFETEEAAQNAIEKLNGMLLNDKQVYVGP 1652
L + F+ G ++S +V D ++ +S GYG+V + T + A A+ +LN M LN + + V
Sbjct: 61 LFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRV-- 118
Query: 1651 FLRKQERESSTDKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSACC-------NEGWG 1493
R+ S K+ N+F+KNL +S L F FG I S ++G+G
Sbjct: 119 --MYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYG 176
Query: 1492 WEIKVLWICEL*EC**CC*SC*VS*WEKG**PGTGMLEKLK-RNLKGSQTLKNKFERAMK 1316
+ V + + G ++KL L Q F ++
Sbjct: 177 F---VQYDTDE--------------------AAQGAIDKLNGMLLNDKQVYVGPFVHKLQ 213
Query: 1315 E--AADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGISRGSGFVAFST 1142
+ +K + N+YVKNL +S++DE+L ++F +G TSC +MRD G S+G GFV F
Sbjct: 214 RDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFEN 273
Query: 1141 PEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQ 1016
++A+RA+ +NGK K +V AQ+K +R L+ +F Q
Sbjct: 274 SDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQ 315
Score = 71.2 bits (173), Expect = 5e-11
Identities = 33/49 (67%), Positives = 41/49 (83%)
Frame = -2
Query: 1512 VVMRDGDGKSKCFGFVNFENADDAARAVESLNGKKVDDQELVCWKSSKE 1366
V+MRDG+GKSK FGFVNFEN+DDAARAV++LNGK DD+E K+ K+
Sbjct: 254 VIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKK 302
Score = 71.2 bits (173), Expect = 5e-11
Identities = 34/72 (47%), Positives = 49/72 (67%)
Frame = -1
Query: 1288 NLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEM 1109
N+++KNLD SI + L E FS++G I SCKV DP+G S+G GFV + T E A A+ ++
Sbjct: 134 NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 1108 NGKMVVSKPLYV 1073
NG ++ K +YV
Sbjct: 194 NGMLLNDKQVYV 205
Score = 51.6 bits (122), Expect = 4e-05
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = -1
Query: 1288 NLYVKNLDDSIADEKLKELFSSYGTITSCKVMRD-PNGISRGSGFVAFSTPEEASRALLE 1112
+LYV +LD ++ D +L E F+ G + S +V RD S G G+V ++TP++ASRAL E
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 1111 MNGKMVVSKPLYVTLAQRKEDRR 1043
+N + + + V + R R
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLR 128
Score = 36.2 bits (82), Expect(3) = e-174
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1
Query: 337 QAGGAADQLASLSLGDN 287
QAGGAADQLASLSLGDN
Sbjct: 652 QAGGAADQLASLSLGDN 668
Score = 36.2 bits (82), Expect = 1.8
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -2
Query: 1509 VMRDGDGKSKCFGFVNFENADDAARAVESLNGKKV 1405
VMRD G S+ GFV F ++A RA+ +NGK +
Sbjct: 358 VMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMI 392
Score = 35.0 bits (79), Expect = 4.1
Identities = 15/28 (53%), Positives = 20/28 (70%)
Frame = -3
Query: 1421 LMGKRLMTRNWYVGKAQKKSEREPDTEK 1338
L GK + W+VGKAQKKSERE + ++
Sbjct: 284 LNGKTFDDKEWFVGKAQKKSERETELKQ 311
>ref|NP_195137.1| polyadenylate-binding protein 2 (PABP2); protein id: At4g34110.1
[Arabidopsis thaliana] gi|1171978|sp|P42731|PAB2_ARATH
Polyadenylate-binding protein 2 (Poly(A) binding protein
2) (PABP 2) gi|7439968|pir||T05425 polyadenylate-binding
protein F28A23.130 - Arabidopsis thaliana
gi|304109|gb|AAA61780.1| poly(A)-binding protein
gi|2911051|emb|CAA17561.1| poly(A)-binding protein
[Arabidopsis thaliana] gi|7270360|emb|CAB80128.1|
poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding
protein 2 (PABP2) [Arabidopsis thaliana]
Length = 629
Score = 404 bits (1038), Expect(3) = e-157
Identities = 214/370 (57%), Positives = 262/370 (69%), Gaps = 27/370 (7%)
Frame = -1
Query: 1837 HKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFETEEAAQNAIEKLNGMLLNDKQVYV 1658
HKALHDTFS+FGNI+SCKVA DSSGQSKGYGFVQ+ EE+AQ AIEKLNGMLLNDKQVYV
Sbjct: 137 HKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Query: 1657 GPFLRKQERESSTDKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSACCNEGWGWEIKV 1478
GPFLR+QER+S+ +K KF NV+VKNL+ESTTDD+LKN FGE+G ITSA + + K
Sbjct: 197 GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKG 256
Query: 1477 LWICEL*EC**CC*SC*VS*WEKG**PGTGMLEKLKRNLKGSQTLK-NKFE-------RA 1322
G E + ++L +KF+ RA
Sbjct: 257 F--------------------------GFVNFENADDAARAVESLNGHKFDDKEWYVGRA 290
Query: 1321 MKEAADKYQGANLYVKNLDDS-----------------IADEKLKELFSSYGTITSCKVM 1193
K++ + + Y +NL ++ I+DEKLKE+FS +GT+TS KVM
Sbjct: 291 QKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVM 350
Query: 1192 RDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQM 1013
RDPNG S+GSGFVAF+TPEEA+ A+ +++GKM+ SKPLYV +AQRKEDRR RLQAQF+Q+
Sbjct: 351 RDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQV 410
Query: 1012 RPVAMPPA--PRVPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPV 839
RPVAM P+ PR+P+YPPGGPGIGQQ+FYGQ PPA+IP QPG+GYQQQLVPGMRPGG PV
Sbjct: 411 RPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPV 470
Query: 838 PNFFMPMVPP 809
P+FFMPMV P
Sbjct: 471 PSFFMPMVQP 480
Score = 171 bits (432), Expect(3) = e-157
Identities = 100/156 (64%), Positives = 115/156 (73%), Gaps = 3/156 (1%)
Frame = -2
Query: 801 QGQRPGG-RRAGAVQQSQQPVPLMPQQMLPRGRVYRYPPGR-GMPEVPMPGVAGGMFSVP 628
Q QRPGG RR G +Q SQQ P+M QQM PRGR++RYP GR G +VP P
Sbjct: 481 QQQRPGGGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVP-----------P 529
Query: 627 YDV-SGMPLRDGSLSQQIPVGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAQVTG 451
YD+ + MPL +GALAS L+NA+PEQQRTMLGE LYPLVEQ+E ++AA+VTG
Sbjct: 530 YDMGNNMPL---------TIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTG 580
Query: 450 MLLEMDQTEVLHLLESPEALKAKVAEAMDVLRTCRA 343
MLLEMDQTEVLHLLESPEALKAKVAEAMDVLR+ A
Sbjct: 581 MLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVAA 616
Score = 114 bits (286), Expect = 4e-24
Identities = 88/282 (31%), Positives = 130/282 (45%), Gaps = 11/282 (3%)
Frame = -1
Query: 1828 LHDTFSTFGNILSCKVATDS-SGQSKGYGFVQFETEEAAQNAIEKLNGMLLNDKQVYVGP 1652
L D F G +++ +V D + +S GYG+V F + A AI++LN + L K + V
Sbjct: 52 LFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRV-- 109
Query: 1651 FLRKQERESSTDKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSACC-------NEGWG 1493
R+ S ++ N+F+KNL ES L + F FG I S ++G+G
Sbjct: 110 --MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYG 167
Query: 1492 WEIKVLWICEL*EC**CC*SC*VS*WEKG**PGTGMLEKLK-RNLKGSQTLKNKFERAMK 1316
+ V + E +EKL L Q F R +
Sbjct: 168 F---VQYANEE--------------------SAQKAIEKLNGMLLNDKQVYVGPFLRRQE 204
Query: 1315 --EAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGISRGSGFVAFST 1142
A+K + N+YVKNL +S D+ LK F YG ITS VM+D G S+G GFV F
Sbjct: 205 RDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFEN 264
Query: 1141 PEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQ 1016
++A+RA+ +NG K YV AQ+K +R L+ ++ Q
Sbjct: 265 ADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 306
Score = 73.6 bits (179), Expect = 1e-11
Identities = 34/81 (41%), Positives = 55/81 (66%)
Frame = -1
Query: 1288 NLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEM 1109
N+++KNLD+SI + L + FSS+G I SCKV D +G S+G GFV ++ E A +A+ ++
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 1108 NGKMVVSKPLYVTLAQRKEDR 1046
NG ++ K +YV R+++R
Sbjct: 185 NGMLLNDKQVYVGPFLRRQER 205
Score = 72.8 bits (177), Expect = 2e-11
Identities = 35/49 (71%), Positives = 41/49 (83%)
Frame = -2
Query: 1512 VVMRDGDGKSKCFGFVNFENADDAARAVESLNGKKVDDQELVCWKSSKE 1366
VVM+DG+GKSK FGFVNFENADDAARAVESLNG K DD+E ++ K+
Sbjct: 245 VVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK 293
Score = 54.7 bits (130), Expect = 5e-06
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = -1
Query: 1309 ADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRD-PNGISRGSGFVAFSTPEE 1133
A ++ +LYV +LD ++ D +L + F GT+ + +V RD S G G+V F+ P++
Sbjct: 30 ATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQD 89
Query: 1132 ASRALLEMNGKMVVSKPLYVTLAQR 1058
A+RA+ E+N + KP+ V + R
Sbjct: 90 AARAIQELNYIPLYGKPIRVMYSHR 114
Score = 38.9 bits (89), Expect = 0.28
Identities = 15/37 (40%), Positives = 26/37 (69%)
Frame = -2
Query: 1500 DGDGKSKCFGFVNFENADDAARAVESLNGKKVDDQEL 1390
D G+SK +GFV + N + A +A+E LNG ++D+++
Sbjct: 158 DSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 194
Score = 36.6 bits (83), Expect = 1.4
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -2
Query: 1509 VMRDGDGKSKCFGFVNFENADDAARAVESLNGKKVDDQEL 1390
VMRD +G SK GFV F ++A A+ L+GK ++ + L
Sbjct: 349 VMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPL 388
Score = 33.9 bits (76), Expect = 9.1
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -3
Query: 1421 LMGKRLMTRNWYVGKAQKKSEREPD 1347
L G + + WYVG+AQKKSERE +
Sbjct: 275 LNGHKFDDKEWYVGRAQKKSERETE 299
Score = 32.0 bits (71), Expect(2) = 0.37
Identities = 13/24 (54%), Positives = 18/24 (74%)
Frame = -2
Query: 1488 KSKCFGFVNFENADDAARAVESLN 1417
+S +G+VNF N DAARA++ LN
Sbjct: 75 RSLGYGYVNFTNPQDAARAIQELN 98
Score = 28.1 bits (61), Expect(3) = e-157
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -1
Query: 355 DMSRSTQAGGAADQLASLSL 296
D+ RS AGGA +QLASL+L
Sbjct: 609 DVLRSVAAGGATEQLASLNL 628
Score = 25.4 bits (54), Expect(2) = 0.37
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -1
Query: 1600 NVFVKNLSESTTDDELKNVFGEFGTITS 1517
+++V +L + TD +L + FG+ GT+ +
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVT 64
>gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 404 bits (1038), Expect(3) = e-157
Identities = 214/370 (57%), Positives = 262/370 (69%), Gaps = 27/370 (7%)
Frame = -1
Query: 1837 HKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFETEEAAQNAIEKLNGMLLNDKQVYV 1658
HKALHDTFS+FGNI+SCKVA DSSGQSKGYGFVQ+ EE+AQ AIEKLNGMLLNDKQVYV
Sbjct: 121 HKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 180
Query: 1657 GPFLRKQERESSTDKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSACCNEGWGWEIKV 1478
GPFLR+QER+S+ +K KF NV+VKNL+ESTTDD+LKN FGE+G ITSA + + K
Sbjct: 181 GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKG 240
Query: 1477 LWICEL*EC**CC*SC*VS*WEKG**PGTGMLEKLKRNLKGSQTLK-NKFE-------RA 1322
G E + ++L +KF+ RA
Sbjct: 241 F--------------------------GFVNFENADDAARAVESLNGHKFDDKEWYVGRA 274
Query: 1321 MKEAADKYQGANLYVKNLDDS-----------------IADEKLKELFSSYGTITSCKVM 1193
K++ + + Y +NL ++ I+DEKLKE+FS +GT+TS KVM
Sbjct: 275 QKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVM 334
Query: 1192 RDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQM 1013
RDPNG S+GSGFVAF+TPEEA+ A+ +++GKM+ SKPLYV +AQRKEDRR RLQAQF+Q+
Sbjct: 335 RDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQV 394
Query: 1012 RPVAMPPA--PRVPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPV 839
RPVAM P+ PR+P+YPPGGPGIGQQ+FYGQ PPA+IP QPG+GYQQQLVPGMRPGG PV
Sbjct: 395 RPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPV 454
Query: 838 PNFFMPMVPP 809
P+FFMPMV P
Sbjct: 455 PSFFMPMVQP 464
Score = 171 bits (432), Expect(3) = e-157
Identities = 100/156 (64%), Positives = 115/156 (73%), Gaps = 3/156 (1%)
Frame = -2
Query: 801 QGQRPGG-RRAGAVQQSQQPVPLMPQQMLPRGRVYRYPPGR-GMPEVPMPGVAGGMFSVP 628
Q QRPGG RR G +Q SQQ P+M QQM PRGR++RYP GR G +VP P
Sbjct: 465 QQQRPGGGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVP-----------P 513
Query: 627 YDV-SGMPLRDGSLSQQIPVGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAQVTG 451
YD+ + MPL +GALAS L+NA+PEQQRTMLGE LYPLVEQ+E ++AA+VTG
Sbjct: 514 YDMGNNMPL---------TIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTG 564
Query: 450 MLLEMDQTEVLHLLESPEALKAKVAEAMDVLRTCRA 343
MLLEMDQTEVLHLLESPEALKAKVAEAMDVLR+ A
Sbjct: 565 MLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVAA 600
Score = 114 bits (286), Expect = 4e-24
Identities = 88/282 (31%), Positives = 130/282 (45%), Gaps = 11/282 (3%)
Frame = -1
Query: 1828 LHDTFSTFGNILSCKVATDS-SGQSKGYGFVQFETEEAAQNAIEKLNGMLLNDKQVYVGP 1652
L D F G +++ +V D + +S GYG+V F + A AI++LN + L K + V
Sbjct: 36 LFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRV-- 93
Query: 1651 FLRKQERESSTDKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSACC-------NEGWG 1493
R+ S ++ N+F+KNL ES L + F FG I S ++G+G
Sbjct: 94 --MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYG 151
Query: 1492 WEIKVLWICEL*EC**CC*SC*VS*WEKG**PGTGMLEKLK-RNLKGSQTLKNKFERAMK 1316
+ V + E +EKL L Q F R +
Sbjct: 152 F---VQYANEE--------------------SAQKAIEKLNGMLLNDKQVYVGPFLRRQE 188
Query: 1315 --EAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGISRGSGFVAFST 1142
A+K + N+YVKNL +S D+ LK F YG ITS VM+D G S+G GFV F
Sbjct: 189 RDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFEN 248
Query: 1141 PEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQ 1016
++A+RA+ +NG K YV AQ+K +R L+ ++ Q
Sbjct: 249 ADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 290
Score = 73.6 bits (179), Expect = 1e-11
Identities = 34/81 (41%), Positives = 55/81 (66%)
Frame = -1
Query: 1288 NLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEM 1109
N+++KNLD+SI + L + FSS+G I SCKV D +G S+G GFV ++ E A +A+ ++
Sbjct: 109 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 168
Query: 1108 NGKMVVSKPLYVTLAQRKEDR 1046
NG ++ K +YV R+++R
Sbjct: 169 NGMLLNDKQVYVGPFLRRQER 189
Score = 72.8 bits (177), Expect = 2e-11
Identities = 35/49 (71%), Positives = 41/49 (83%)
Frame = -2
Query: 1512 VVMRDGDGKSKCFGFVNFENADDAARAVESLNGKKVDDQELVCWKSSKE 1366
VVM+DG+GKSK FGFVNFENADDAARAVESLNG K DD+E ++ K+
Sbjct: 229 VVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK 277
Score = 54.7 bits (130), Expect = 5e-06
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = -1
Query: 1309 ADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRD-PNGISRGSGFVAFSTPEE 1133
A ++ +LYV +LD ++ D +L + F GT+ + +V RD S G G+V F+ P++
Sbjct: 14 ATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQD 73
Query: 1132 ASRALLEMNGKMVVSKPLYVTLAQR 1058
A+RA+ E+N + KP+ V + R
Sbjct: 74 AARAIQELNYIPLYGKPIRVMYSHR 98
Score = 38.9 bits (89), Expect = 0.28
Identities = 15/37 (40%), Positives = 26/37 (69%)
Frame = -2
Query: 1500 DGDGKSKCFGFVNFENADDAARAVESLNGKKVDDQEL 1390
D G+SK +GFV + N + A +A+E LNG ++D+++
Sbjct: 142 DSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 178
Score = 36.6 bits (83), Expect = 1.4
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -2
Query: 1509 VMRDGDGKSKCFGFVNFENADDAARAVESLNGKKVDDQEL 1390
VMRD +G SK GFV F ++A A+ L+GK ++ + L
Sbjct: 333 VMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPL 372
Score = 33.9 bits (76), Expect = 9.1
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -3
Query: 1421 LMGKRLMTRNWYVGKAQKKSEREPD 1347
L G + + WYVG+AQKKSERE +
Sbjct: 259 LNGHKFDDKEWYVGRAQKKSERETE 283
Score = 32.0 bits (71), Expect(2) = 0.37
Identities = 13/24 (54%), Positives = 18/24 (74%)
Frame = -2
Query: 1488 KSKCFGFVNFENADDAARAVESLN 1417
+S +G+VNF N DAARA++ LN
Sbjct: 59 RSLGYGYVNFTNPQDAARAIQELN 82
Score = 28.1 bits (61), Expect(3) = e-157
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -1
Query: 355 DMSRSTQAGGAADQLASLSL 296
D+ RS AGGA +QLASL+L
Sbjct: 593 DVLRSVAAGGATEQLASLNL 612
Score = 25.4 bits (54), Expect(2) = 0.37
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -1
Query: 1600 NVFVKNLSESTTDDELKNVFGEFGTITS 1517
+++V +L + TD +L + FG+ GT+ +
Sbjct: 21 SLYVGDLDFNVTDSQLFDAFGQMGTVVT 48
>gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 451 bits (1160), Expect = e-125
Identities = 230/351 (65%), Positives = 272/351 (76%), Gaps = 2/351 (0%)
Frame = -1
Query: 1834 KALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFETEEAAQNAIEKLNGMLLNDKQVYVG 1655
KALH+TFS+FG I+SCK+ATD+SGQSKGYGFVQ+++EEAAQ AI+KLNGML+NDKQVYVG
Sbjct: 142 KALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVG 201
Query: 1654 PFLRKQERESSTDKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSACCNEGWGWEIKVL 1475
FLRKQ+R+S K KFNN++VKNLS+ST++D+L+ FGE+GTITS + K
Sbjct: 202 VFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCF 261
Query: 1474 WICEL*EC**CC*SC*VS*WEKG**PGTGMLEKLKRNLKGSQTLKNKFERAMKEAADKYQ 1295
+ +K + K ++ + LK++FE+ +KE DKYQ
Sbjct: 262 GFVNFENPEDAAKAVDALNGKKFD-DKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQ 320
Query: 1294 GANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALL 1115
G NLYVKNLDD+I DEKLKELFS YGTITSCKVMRDP+GISRGSGFVAFSTPEEASRAL
Sbjct: 321 GVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALG 380
Query: 1114 EMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPA--PRVPMYPPGGPGIGQQ 941
EMNGKM+VSKPLYV LAQRKE+RRARLQAQF+QMRPVAMPP+ PR+PMY PG PG+GQQ
Sbjct: 381 EMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQ 440
Query: 940 IFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFMPMVPPGTTGTAP 788
+FYGQ PPA+I Q GFGYQQQLVPGMRPGG P+PNFFMPMV G G P
Sbjct: 441 LFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRP 491
Score = 233 bits (594), Expect(2) = 4e-60
Identities = 115/157 (73%), Positives = 136/157 (86%), Gaps = 1/157 (0%)
Frame = -2
Query: 822 PWFRQGQQGQRPGGRR-AGAVQQSQQPVPLMPQQMLPRGRVYRYPPGRGMPEVPMPGVAG 646
P +QGQQGQRPGGRR AG QQ+QQPVP+MPQQ++PRGR+YR+PPGR + +V MPGV G
Sbjct: 480 PMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGG 539
Query: 645 GMFSVPYDVSGMPLRDGSLSQQIPVGALASALANASPEQQRTMLGENLYPLVEQLEPDNA 466
GM VPY++ GM R+ ++ Q +P+ ALASALANA +QQRTMLGENLYPLV+QLE D+A
Sbjct: 540 GMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHA 599
Query: 465 AQVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR 355
A+VTGMLLEMDQTEVLHLLESP+ALKAKVAEAMDVLR
Sbjct: 600 AKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLR 636
Score = 128 bits (322), Expect = 3e-28
Identities = 94/285 (32%), Positives = 142/285 (48%), Gaps = 14/285 (4%)
Frame = -1
Query: 1828 LHDTFSTFGNILSCKVATD-SSGQSKGYGFVQFETEEAAQNAIEKLNGMLLNDKQVYVGP 1652
L+D F+ G ++S +V D S+G+S GYG+V + ++ A AI+ LN LN+K + V
Sbjct: 56 LYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVS- 114
Query: 1651 FLRKQERESSTDKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSACC-------NEGWG 1493
R+ + K+ N+F+KNL +S L F FGTI S ++G+G
Sbjct: 115 ---VSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYG 171
Query: 1492 W------EIKVLWICEL*EC**CC*SC*VS*WEKG**PGTGMLEKLKRNLKGSQTLKNKF 1331
+ E I +L GML K+ G K
Sbjct: 172 FVQYDSEEAAQTAIDKL----------------------NGMLMNDKQVYVG--VFLRKQ 207
Query: 1330 ERAMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGISRGSGFVA 1151
+R + + K+ N+YVKNL DS +++ L++ F YGTITS VMRD +G S+ GFV
Sbjct: 208 DRDSEMSKTKFN--NIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVN 265
Query: 1150 FSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQ 1016
F PE+A++A+ +NGK K YV AQ+K +R L+++F Q
Sbjct: 266 FENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQ 310
Score = 81.6 bits (200), Expect = 4e-14
Identities = 55/192 (28%), Positives = 99/192 (50%), Gaps = 3/192 (1%)
Frame = -1
Query: 1600 NVFVKNLSESTTDDELKNVFGEFGTITSA--CCNEGWGWEIKVLWICEL*EC**CC*SC* 1427
+++V +L +S TD +L ++F + G + S C + G + ++ +
Sbjct: 41 SLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQ-------- 92
Query: 1426 VS*WEKG**PGTGMLEKLKRNLKGSQTLKNKFERAMKEAADKYQGA-NLYVKNLDDSIAD 1250
T ++ L ++T++ R ++ D+ GA N+++KNLD SI
Sbjct: 93 ---------DATRAIDVLNFTPLNNKTIRVSVSR--RDPTDRKSGAGNIFIKNLDKSIDI 141
Query: 1249 EKLKELFSSYGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVT 1070
+ L E FSS+GTI SCK+ D +G S+G GFV + + E A A+ ++NG ++ K +YV
Sbjct: 142 KALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVG 201
Query: 1069 LAQRKEDRRARL 1034
+ RK+DR + +
Sbjct: 202 VFLRKQDRDSEM 213
Score = 74.3 bits (181), Expect = 6e-12
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = -2
Query: 1512 VVMRDGDGKSKCFGFVNFENADDAARAVESLNGKKVDDQELVCWKSSKE 1366
VVMRD DGKSKCFGFVNFEN +DAA+AV++LNGKK DD+E K+ K+
Sbjct: 249 VVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKK 297
Score = 53.9 bits (128), Expect = 8e-06
Identities = 28/85 (32%), Positives = 54/85 (62%), Gaps = 1/85 (1%)
Frame = -1
Query: 1309 ADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRD-PNGISRGSGFVAFSTPEE 1133
++++ +LYV +LD S+ D +L +LF+ G + S +V RD G S G G+V +S ++
Sbjct: 34 SNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQD 93
Query: 1132 ASRALLEMNGKMVVSKPLYVTLAQR 1058
A+RA+ +N + +K + V++++R
Sbjct: 94 ATRAIDVLNFTPLNNKTIRVSVSRR 118
Score = 37.0 bits (84), Expect = 1.1
Identities = 16/23 (69%), Positives = 18/23 (77%)
Frame = -3
Query: 1421 LMGKRLMTRNWYVGKAQKKSERE 1353
L GK+ + WYVGKAQKKSERE
Sbjct: 279 LNGKKFDDKEWYVGKAQKKSERE 301
Score = 35.4 bits (80), Expect = 3.1
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -2
Query: 1509 VMRDGDGKSKCFGFVNFENADDAARAVESLNGKKVDDQEL 1390
VMRD G S+ GFV F ++A+RA+ +NGK + + L
Sbjct: 353 VMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPL 392
Score = 35.4 bits (80), Expect = 3.1
Identities = 13/40 (32%), Positives = 27/40 (67%)
Frame = -2
Query: 1509 VMRDGDGKSKCFGFVNFENADDAARAVESLNGKKVDDQEL 1390
+ D G+SK +GFV +++ + A A++ LNG ++D+++
Sbjct: 159 IATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQV 198
Score = 22.7 bits (47), Expect(2) = 4e-60
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 355 DMSRSTQAGGAADQLASLSLGDN 287
D+ R+ ADQL LSL +N
Sbjct: 633 DVLRNVSQPNVADQLGGLSLNEN 655
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,760,594,018
Number of Sequences: 1393205
Number of extensions: 46276582
Number of successful extensions: 177431
Number of sequences better than 10.0: 2684
Number of HSP's better than 10.0 without gapping: 135576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173230
length of database: 448,689,247
effective HSP length: 129
effective length of database: 268,965,802
effective search space used: 129641516564
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
