Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001179A_C01 KMC001179A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA15264.1| hypothetical protein [Plasmodium yoelii yoelii] 33 2.3
ref|NP_473179.1| hypothetical protein, conserved [Plasmodium fal... 33 3.0
ref|ZP_00062704.1| hypothetical protein [Leuconostoc mesenteroid... 32 5.1
>gb|EAA15264.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 759
Score = 33.1 bits (74), Expect = 2.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 285 NHMNLPFRKKLQNDYRAALFKFSYPDKFLLP 377
NH+NLPF KK +NDY K ++ F+ P
Sbjct: 31 NHINLPFHKKYKNDYMTHTNKNNFDVNFIHP 61
>ref|NP_473179.1| hypothetical protein, conserved [Plasmodium falciparum 3D7]
gi|4493893|emb|CAB39002.1| hypothetical protein,
conserved [Plasmodium falciparum 3D7]
Length = 3978
Score = 32.7 bits (73), Expect = 3.0
Identities = 32/146 (21%), Positives = 53/146 (35%)
Frame = +1
Query: 82 ISRSVNYSTENGNSVQASAS*LFFDNDYFSLFFSVNSPQNRRNVFTVWLIYVDFYLYKTF 261
I+++ Y TE + L D YF N+ N+ T ++ F+LY+
Sbjct: 2367 INKNKYYDTEMCKKQDEMKNILMNDMQYFKNIIQTNNDNNKEKDNTKDILEDHFFLYENL 2426
Query: 262 FV*SHLNKII*TCLLERNYKMTIGLLFSNFHTQTSFSYHATIRMSITCYFTHGEEIDQIS 441
+ + ++ L Y L SN + + RM Y H + IS
Sbjct: 2427 ----NADDLVYHILYPMKYISKKKDLLSNSYAKDDTFLFLNKRMLCVYYNIHNKYEKGIS 2482
Query: 442 DFQNLEERQNHQ*GRKNKLLFSLNKH 519
E R H R +K+++ KH
Sbjct: 2483 GEHLYEWRNGHINRRDDKIIYKKEKH 2508
>ref|ZP_00062704.1| hypothetical protein [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 422
Score = 32.0 bits (71), Expect = 5.1
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 328 IGLLFSNFHTQTSFSYHATIRMS 396
I LLF+ H Q SF+YHA IR++
Sbjct: 83 IALLFATLHEQMSFTYHAPIRLT 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,623,740
Number of Sequences: 1393205
Number of extensions: 7862735
Number of successful extensions: 24154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24152
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
