Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001173A_C04 KMC001173A_c04
(865 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM19067.1| RNase L inhibitor-like protein [Oryza sativa (jap... 79 1e-13
gb|AAL78685.1| RNaseL inhibitor-like protein ABCE.1 [Dictyosteli... 76 6e-13
ref|NP_187973.1| RNase L inhibitor protein, putative; protein id... 75 1e-12
ref|NP_193656.2| RNase L inhibitor protein, putative; protein id... 75 2e-12
pir||T04442 ABC-type transport protein T18B16.180 - Arabidopsis ... 75 2e-12
>gb|AAM19067.1| RNase L inhibitor-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 604
Score = 78.6 bits (192), Expect = 1e-13
Identities = 47/109 (43%), Positives = 59/109 (54%)
Frame = -1
Query: 865 RLEICLCLFKPADIYLIDEPSQYLPHFNDFDDVADVIKSFFLHTKKAAVVAESSAYMAFL 686
R+ ICLCL KPADIYLIDEPS YL + VIK F LH KK A + E MA
Sbjct: 474 RVAICLCLGKPADIYLIDEPSAYLDSEQRI-VASKVIKRFILHAKKTAFIVEHDFIMATY 532
Query: 685 LLDNRVILCDGKPSICCVATSPHEMFFNLVGILASDLEAIEADPSRNKP 539
L D +VI+ +G+PSI C A +P + + L+ DP +P
Sbjct: 533 LAD-KVIVYEGRPSIDCTANAPQSLVSGMNKFLSHLDITFRRDPPNYRP 580
>gb|AAL78685.1| RNaseL inhibitor-like protein ABCE.1 [Dictyostelium discoideum]
Length = 603
Score = 76.3 bits (186), Expect = 6e-13
Identities = 47/109 (43%), Positives = 58/109 (53%)
Frame = -1
Query: 865 RLEICLCLFKPADIYLIDEPSQYLPHFNDFDDVADVIKSFFLHTKKAAVVAESSAYMAFL 686
R+ I LCL +PADIYLIDEPS YL V+ VIK F LH K+ + E MA
Sbjct: 470 RVAIVLCLGQPADIYLIDEPSAYLDSEQRI-IVSKVIKRFILHAGKSGFIVEHDFIMATY 528
Query: 685 LLDNRVILCDGKPSICCVATSPHEMFFNLVGILASDLEAIEADPSRNKP 539
L D RVI+ DG P + CVA +P + + L S DPS +P
Sbjct: 529 LAD-RVIVYDGIPGVSCVANTPQSLLTGMNSFLKSLEITFRRDPSNFRP 576
>ref|NP_187973.1| RNase L inhibitor protein, putative; protein id: At3g13640.1
[Arabidopsis thaliana] gi|9294008|dbj|BAB01911.1| RNase
L inhibitor [Arabidopsis thaliana]
gi|28393118|gb|AAO41992.1| putative RNase L inhibitor
protein [Arabidopsis thaliana]
gi|28827462|gb|AAO50575.1| putative RNase L inhibitor
protein [Arabidopsis thaliana]
Length = 603
Score = 75.5 bits (184), Expect = 1e-12
Identities = 45/109 (41%), Positives = 60/109 (54%)
Frame = -1
Query: 865 RLEICLCLFKPADIYLIDEPSQYLPHFNDFDDVADVIKSFFLHTKKAAVVAESSAYMAFL 686
R+ I LCL KPADIYLIDEPS +L + VIK F LH KK A + E MA
Sbjct: 473 RVAITLCLGKPADIYLIDEPSAHLDSEQRI-TASKVIKRFILHAKKTAFIVEHDFIMATY 531
Query: 685 LLDNRVILCDGKPSICCVATSPHEMFFNLVGILASDLEAIEADPSRNKP 539
L D RVI+ +G+P++ C+A SP + + L+ DP+ +P
Sbjct: 532 LAD-RVIVYEGQPAVKCIAHSPQSLLSGMNHFLSHLNITFRRDPTNFRP 579
Score = 37.0 bits (84), Expect = 0.38
Identities = 28/82 (34%), Positives = 34/82 (41%)
Frame = -1
Query: 865 RLEICLCLFKPADIYLIDEPSQYLPHFNDFDDVADVIKSFFLHTKKAAVVAESSAYMAFL 686
R I K ADIY+ DEPS YL A VI+S H VV + + +
Sbjct: 224 RFAIAAVFVKKADIYMFDEPSSYL-DVRQRLKAAQVIRSLLRHDSYVIVVEHDLSVLDY- 281
Query: 685 LLDNRVILCDGKPSICCVATSP 620
L + V GKP V T P
Sbjct: 282 -LSDFVCCLYGKPGAYGVVTLP 302
>ref|NP_193656.2| RNase L inhibitor protein, putative; protein id: At4g19210.1,
supported by cDNA: gi_20466461 [Arabidopsis thaliana]
gi|20466462|gb|AAM20548.1| RNase L inhibitor-like
protein [Arabidopsis thaliana]
gi|23198180|gb|AAN15617.1| RNase L inhibitor-like
protein [Arabidopsis thaliana]
Length = 605
Score = 74.7 bits (182), Expect = 2e-12
Identities = 47/109 (43%), Positives = 58/109 (53%)
Frame = -1
Query: 865 RLEICLCLFKPADIYLIDEPSQYLPHFNDFDDVADVIKSFFLHTKKAAVVAESSAYMAFL 686
R+ + LCL KPADIYLIDEPS YL + VIK F LH KK A V E MA
Sbjct: 475 RVALTLCLGKPADIYLIDEPSAYLDSEQRI-VASKVIKRFILHAKKTAFVVEHDFIMATY 533
Query: 685 LLDNRVILCDGKPSICCVATSPHEMFFNLVGILASDLEAIEADPSRNKP 539
L D RVI+ +G+PSI C A P + + L+ DP+ +P
Sbjct: 534 LAD-RVIVYEGQPSIDCTANCPQSLLSGMNLFLSHLNITFRRDPTNFRP 581
>pir||T04442 ABC-type transport protein T18B16.180 - Arabidopsis thaliana
gi|2828296|emb|CAA16710.1| RNase L inhibitor-like
protein [Arabidopsis thaliana]
gi|7268716|emb|CAB78923.1| RNase L inhibitor-like
protein [Arabidopsis thaliana]
Length = 600
Score = 74.7 bits (182), Expect = 2e-12
Identities = 47/109 (43%), Positives = 58/109 (53%)
Frame = -1
Query: 865 RLEICLCLFKPADIYLIDEPSQYLPHFNDFDDVADVIKSFFLHTKKAAVVAESSAYMAFL 686
R+ + LCL KPADIYLIDEPS YL + VIK F LH KK A V E MA
Sbjct: 470 RVALTLCLGKPADIYLIDEPSAYLDSEQRI-VASKVIKRFILHAKKTAFVVEHDFIMATY 528
Query: 685 LLDNRVILCDGKPSICCVATSPHEMFFNLVGILASDLEAIEADPSRNKP 539
L D RVI+ +G+PSI C A P + + L+ DP+ +P
Sbjct: 529 LAD-RVIVYEGQPSIDCTANCPQSLLSGMNLFLSHLNITFRRDPTNFRP 576
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 728,111,319
Number of Sequences: 1393205
Number of extensions: 16326969
Number of successful extensions: 104171
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 60703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91577
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 45988509105
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
