Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001163A_C01 KMC001163A_c01
(965 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O49885|R13A_LUPLU 60S RIBOSOMAL PROTEIN L13A gi|2791948|emb|C... 202 6e-51
ref|NP_193053.1| ribosomal protein L13a like protein; protein id... 197 2e-49
gb|AAL87341.1| putative 60S ribosomal protein [Arabidopsis thali... 196 4e-49
ref|NP_189127.1| 60S ribosomal protein, putative; protein id: At... 196 6e-49
ref|NP_199687.1| 60S ribosomal protein L13a; protein id: At5g487... 196 6e-49
>sp|O49885|R13A_LUPLU 60S RIBOSOMAL PROTEIN L13A gi|2791948|emb|CAA11283.1| ribosomal
protein L13a [Lupinus luteus]
Length = 205
Score = 202 bits (514), Expect = 6e-51
Identities = 97/112 (86%), Positives = 107/112 (94%)
Frame = -2
Query: 964 HKTKRGEAALARLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKHCLLGKLSSEVGWNY 785
HKTKRGE ALARLKVYEGIPPP+DK KR+VVPDALKVLRLQKGHK+CLLG+LSSEVGWNY
Sbjct: 94 HKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNY 153
Query: 784 YDTIKELEKKRKDKAQVVYERKKQLTKLRAKAEKIADEKLGSQLEILAPVKY 629
YDTIKELEKKRK+++QVVYERKKQL KLR KAE++A EKLGSQL+ILAPVKY
Sbjct: 154 YDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDILAPVKY 205
>ref|NP_193053.1| ribosomal protein L13a like protein; protein id: At4g13170.1,
supported by cDNA: gi_15529277, supported by cDNA:
gi_16974410 [Arabidopsis thaliana]
gi|17865573|sp|Q9SVR0|R1AC_ARATH 60S ribosomal protein
L13a-3 gi|7440818|pir||T07697 ribosomal protein L13a,
cytosolic - Arabidopsis thaliana
gi|4753651|emb|CAB41927.1| ribosomal protein L13a like
protein [Arabidopsis thaliana]
gi|7268019|emb|CAB78359.1| ribosomal protein L13a like
protein [Arabidopsis thaliana]
gi|15529278|gb|AAK97733.1| AT4g13170/F17N18_60
[Arabidopsis thaliana] gi|16974411|gb|AAL31131.1|
AT4g13170/F17N18_60 [Arabidopsis thaliana]
Length = 206
Score = 197 bits (501), Expect = 2e-49
Identities = 92/112 (82%), Positives = 107/112 (95%)
Frame = -2
Query: 964 HKTKRGEAALARLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKHCLLGKLSSEVGWNY 785
HKTKRG AALARLKV+EGIPPPYDK+KRMV+PDALKVLRLQ GHK+CLLG+LSSEVGWN+
Sbjct: 95 HKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNH 154
Query: 784 YDTIKELEKKRKDKAQVVYERKKQLTKLRAKAEKIADEKLGSQLEILAPVKY 629
YDTIKELE KRK+++QV+YERKKQL KLR KAEK+A+E+LGSQL++LAPVKY
Sbjct: 155 YDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVKY 206
>gb|AAL87341.1| putative 60S ribosomal protein [Arabidopsis thaliana]
Length = 206
Score = 196 bits (498), Expect = 4e-49
Identities = 92/112 (82%), Positives = 107/112 (95%)
Frame = -2
Query: 964 HKTKRGEAALARLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKHCLLGKLSSEVGWNY 785
HKTKRG AALARLKV+EG+PPPYDK+KRMVVPDALKVLRLQ GHK+CLLG+LSSEVGWN+
Sbjct: 95 HKTKRGAAALARLKVFEGVPPPYDKVKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNH 154
Query: 784 YDTIKELEKKRKDKAQVVYERKKQLTKLRAKAEKIADEKLGSQLEILAPVKY 629
YDTIKELE KRK+++Q +YERKKQLTKLRAKAEK+A+EKLGSQL++LA +KY
Sbjct: 155 YDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206
>ref|NP_189127.1| 60S ribosomal protein, putative; protein id: At3g24830.1, supported
by cDNA: 28093. [Arabidopsis thaliana]
gi|17865564|sp|Q9LRX8|R1AB_ARATH 60S ribosomal protein
L13a-2 gi|11994665|dbj|BAB02893.1| 60S ribosomal protein
L13A-like [Arabidopsis thaliana]
gi|23297306|gb|AAN12937.1| putative 60S ribosomal
protein [Arabidopsis thaliana]
Length = 206
Score = 196 bits (497), Expect = 6e-49
Identities = 91/112 (81%), Positives = 107/112 (95%)
Frame = -2
Query: 964 HKTKRGEAALARLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKHCLLGKLSSEVGWNY 785
HKTKRG AALARLKV+EG+PPPYDK+KRMV+PDALKVLRLQ GHK+CLLG+LSSEVGWN+
Sbjct: 95 HKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNH 154
Query: 784 YDTIKELEKKRKDKAQVVYERKKQLTKLRAKAEKIADEKLGSQLEILAPVKY 629
YDTIKELE KRK+++Q +YERKKQLTKLRAKAEK+A+EKLGSQL++LA +KY
Sbjct: 155 YDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206
>ref|NP_199687.1| 60S ribosomal protein L13a; protein id: At5g48760.1, supported by
cDNA: 4275., supported by cDNA: gi_19699304 [Arabidopsis
thaliana] gi|17865558|sp|Q9FKC0|R1AD_ARATH 60S ribosomal
protein L13a-4 gi|9758875|dbj|BAB09429.1| 60S ribosomal
protein L13a [Arabidopsis thaliana]
gi|19699305|gb|AAL91263.1| AT5g48760/K24G6_9
[Arabidopsis thaliana] gi|21593767|gb|AAM65734.1| 60S
ribosomal protein L13a [Arabidopsis thaliana]
gi|21689627|gb|AAM67435.1| At5g48760/K24G6_9
[Arabidopsis thaliana]
Length = 206
Score = 196 bits (497), Expect = 6e-49
Identities = 93/112 (83%), Positives = 105/112 (93%)
Frame = -2
Query: 964 HKTKRGEAALARLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKHCLLGKLSSEVGWNY 785
HKTKRG AALARLKVYEG+P PYDK+KRMV+PDALKVLRLQ GHK+CLLG+LSSEVGWN+
Sbjct: 95 HKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNH 154
Query: 784 YDTIKELEKKRKDKAQVVYERKKQLTKLRAKAEKIADEKLGSQLEILAPVKY 629
YDTIKELE KRK++A VVYERKKQL KLR KAEK+A+EKLG+QL+ILAPVKY
Sbjct: 155 YDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 826,068,554
Number of Sequences: 1393205
Number of extensions: 18522153
Number of successful extensions: 49945
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 46240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49614
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 54910356336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
