Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001154A_C01 KMC001154A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175425.2| unknown protein; protein id: At1g50030.1, suppo... 78 9e-14
gb|AAM13218.1| unknown protein [Arabidopsis thaliana] gi|2508392... 78 9e-14
pir||G96536 hypothetical protein F2J10.9 [imported] - Arabidopsi... 64 1e-09
gb|AAO43977.1| Tor [Dictyostelium discoideum] 59 5e-08
emb|CAC15570.1| rapamycin associated protein FRAP2 [Homo sapiens] 55 5e-07
>ref|NP_175425.2| unknown protein; protein id: At1g50030.1, supported by cDNA:
gi_12002901 [Arabidopsis thaliana]
gi|12002902|gb|AAG43423.1|AF178967_1 pTOR [Arabidopsis
thaliana]
Length = 2481
Score = 77.8 bits (190), Expect = 9e-14
Identities = 33/43 (76%), Positives = 37/43 (85%)
Frame = -2
Query: 560 LISVDTREVDHALSVKLQVQKLIGQATSHENLCPNYVGWCPFW 432
L+ D+ EV+H LSVK+QVQKLI QATSHENLC NYVGWCPFW
Sbjct: 2439 LLGGDSHEVEHGLSVKVQVQKLINQATSHENLCQNYVGWCPFW 2481
>gb|AAM13218.1| unknown protein [Arabidopsis thaliana] gi|25083928|gb|AAN72136.1|
unknown protein [Arabidopsis thaliana]
Length = 374
Score = 77.8 bits (190), Expect = 9e-14
Identities = 33/43 (76%), Positives = 37/43 (85%)
Frame = -2
Query: 560 LISVDTREVDHALSVKLQVQKLIGQATSHENLCPNYVGWCPFW 432
L+ D+ EV+H LSVK+QVQKLI QATSHENLC NYVGWCPFW
Sbjct: 332 LLGGDSHEVEHGLSVKVQVQKLINQATSHENLCQNYVGWCPFW 374
>pir||G96536 hypothetical protein F2J10.9 [imported] - Arabidopsis thaliana
gi|8569097|gb|AAF76442.1|AC015445_9 Contains strong
similarity to rapamycin associated protein FRAP2 from
Homo sapiens gb|U88966 and contains a
Phosphatidylinositol kinase PF|00454 domain. EST
gb|W43444 comes from this gene. [Arabidopsis thaliana]
Length = 2513
Score = 63.9 bits (154), Expect = 1e-09
Identities = 29/41 (70%), Positives = 34/41 (82%)
Frame = -2
Query: 560 LISVDTREVDHALSVKLQVQKLIGQATSHENLCPNYVGWCP 438
L+ D+ EV+H LSVK+QVQKLI QATSHENLC NYVG+ P
Sbjct: 2462 LLGGDSHEVEHGLSVKVQVQKLINQATSHENLCQNYVGYVP 2502
>gb|AAO43977.1| Tor [Dictyostelium discoideum]
Length = 2380
Score = 58.5 bits (140), Expect = 5e-08
Identities = 25/34 (73%), Positives = 27/34 (78%)
Frame = -2
Query: 533 DHALSVKLQVQKLIGQATSHENLCPNYVGWCPFW 432
+ L V QVQKLI QATSHENLC +YVGWCPFW
Sbjct: 2347 NETLDVPEQVQKLIDQATSHENLCLSYVGWCPFW 2380
>emb|CAC15570.1| rapamycin associated protein FRAP2 [Homo sapiens]
Length = 1188
Score = 55.5 bits (132), Expect = 5e-07
Identities = 23/34 (67%), Positives = 25/34 (72%)
Frame = -2
Query: 533 DHALSVKLQVQKLIGQATSHENLCPNYVGWCPFW 432
D L V QV+ LI QATSHENLC Y+GWCPFW
Sbjct: 1155 DDTLDVPTQVELLIKQATSHENLCQCYIGWCPFW 1188
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,061,207
Number of Sequences: 1393205
Number of extensions: 12195303
Number of successful extensions: 187329
Number of sequences better than 10.0: 1830
Number of HSP's better than 10.0 without gapping: 37293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114701
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
