Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001149A_C01 KMC001149A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198394.1| putative protein; protein id: At5g35440.1 [Arab... 72 7e-12
gb|AAL09746.1| AT5g35440/MOK9_2 [Arabidopsis thaliana] gi|216552... 72 7e-12
gb|AAH47204.1| Similar to RIKEN cDNA 2600001P13 gene [Mus musculus] 34 1.6
ref|ZP_00067269.1| hypothetical protein [Microbulbifer degradans... 34 1.6
ref|XP_135250.1| hypothetical protein MGC37693 [Mus musculus] gi... 34 1.6
>ref|NP_198394.1| putative protein; protein id: At5g35440.1 [Arabidopsis thaliana]
gi|9758145|dbj|BAB08702.1|
gb|AAD55417.1~gene_id:MOK9.2~similar to unknown protein
[Arabidopsis thaliana]
Length = 597
Score = 71.6 bits (174), Expect = 7e-12
Identities = 32/69 (46%), Positives = 51/69 (73%)
Frame = -3
Query: 586 AALSAMQGEFEKANVLVTQALSILPNSPEAILTAVYVDLLVGKPQEALAKLKSCSRIRFL 407
AAL A QG ++A L+T AL++LPN+ +A +TAVY+DL++G+ Q+ALA+LK C+ + F+
Sbjct: 529 AALLATQGHHDQAKSLITHALTLLPNNVQATVTAVYIDLMLGRSQDALARLKQCTHVSFV 588
Query: 406 PSGVALNKS 380
P + + S
Sbjct: 589 PGRLEVRAS 597
>gb|AAL09746.1| AT5g35440/MOK9_2 [Arabidopsis thaliana] gi|21655297|gb|AAM65360.1|
AT5g35440/MOK9_2 [Arabidopsis thaliana]
Length = 786
Score = 71.6 bits (174), Expect = 7e-12
Identities = 32/69 (46%), Positives = 51/69 (73%)
Frame = -3
Query: 586 AALSAMQGEFEKANVLVTQALSILPNSPEAILTAVYVDLLVGKPQEALAKLKSCSRIRFL 407
AAL A QG ++A L+T AL++LPN+ +A +TAVY+DL++G+ Q+ALA+LK C+ + F+
Sbjct: 718 AALLATQGHHDQAKSLITHALTLLPNNVQATVTAVYIDLMLGRSQDALARLKQCTHVSFV 777
Query: 406 PSGVALNKS 380
P + + S
Sbjct: 778 PGRLEVRAS 786
>gb|AAH47204.1| Similar to RIKEN cDNA 2600001P13 gene [Mus musculus]
Length = 100
Score = 33.9 bits (76), Expect = 1.6
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = -3
Query: 571 MQGEFEKANVLVTQALSILPNS---PEAILTAVYVDLLVGKPQEALAKLKSCSRIRFLPS 401
++ E++KA + QA S++ PEAIL AVY++L G Q AL +K R + LP+
Sbjct: 11 LRSEYDKARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLALQMIK---RNQLLPA 67
>ref|ZP_00067269.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 223
Score = 33.9 bits (76), Expect = 1.6
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = -3
Query: 568 QGEFEKANVLVTQALSILPNSPEAIL-TAVYVDLLVGKPQEALAKLKSCSRIRFLPS 401
QG FE+A++ AL + P+ +++ +A+ DL +GK EAL + K ++I+ P+
Sbjct: 148 QGLFEQADMAYQSALEVWPHHADSLKNSAILYDLYLGKLPEALERYKLLAQIQGEPT 204
>ref|XP_135250.1| hypothetical protein MGC37693 [Mus musculus]
gi|24659619|gb|AAH39183.1| Similar to hypothetical
protein FLJ12890 [Mus musculus]
gi|26325090|dbj|BAC26299.1| unnamed protein product [Mus
musculus]
Length = 744
Score = 33.9 bits (76), Expect = 1.6
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = -3
Query: 571 MQGEFEKANVLVTQALSILPNS---PEAILTAVYVDLLVGKPQEALAKLKSCSRIRFLPS 401
++ E++KA + QA S++ PEAIL AVY++L G Q AL +K R + LP+
Sbjct: 655 LRSEYDKARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLALQMIK---RNQLLPA 711
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,178,252
Number of Sequences: 1393205
Number of extensions: 9828426
Number of successful extensions: 20440
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 19976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20440
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
