Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001146A_C01 KMC001146A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199673.1| disease resistance protein (CC-NBS-LRR class), ... 74 1e-12
ref|NP_199160.1| disease resistance protein RPP8-like (CC-NBS-LR... 72 4e-12
gb|AAL32592.1| disease resistance protein RPP8 [Arabidopsis thal... 72 4e-12
pir||T48898 disease resistance protein RPP8 [validated] - Arabid... 72 5e-12
gb|AAF36987.1|AF234174_1 viral resistance protein [Arabidopsis t... 72 5e-12
>ref|NP_199673.1| disease resistance protein (CC-NBS-LRR class), putative; protein id:
At5g48620.1 [Arabidopsis thaliana]
gi|10177352|dbj|BAB10695.1| disease resistance protein
[Arabidopsis thaliana] gi|26449428|dbj|BAC41841.1|
putative disease resistance protein [Arabidopsis
thaliana] gi|29029048|gb|AAO64903.1| At5g48620
[Arabidopsis thaliana]
Length = 908
Score = 73.9 bits (180), Expect = 1e-12
Identities = 34/63 (53%), Positives = 46/63 (72%)
Frame = -1
Query: 588 LSISDCNKLKTVPDGLKFVTGLRELEIRWMPTSFKTRLGTAGEDYHKVQHVPSIVFFN*V 409
L+I DC KLK +PDGLK++T L+EL+IR M +K +L GEDY+KVQH+P + F N
Sbjct: 848 LTIHDCEKLKELPDGLKYITSLKELKIREMKREWKEKLVPGGEDYYKVQHIPDVQFIN-- 905
Query: 408 CNL 400
C+L
Sbjct: 906 CDL 908
>ref|NP_199160.1| disease resistance protein RPP8-like (CC-NBS-LRR class), putative;
protein id: At5g43470.1, supported by cDNA: gi_17064875
[Arabidopsis thaliana] gi|11357252|pir||T48899 disease
resistance protein rpp8 [similarity] - Arabidopsis
thaliana gi|3901294|gb|AAC78631.1| rpp8 [Arabidopsis
thaliana] gi|8843900|dbj|BAA97426.1| disease resistance
protein RPP8 [Arabidopsis thaliana]
Length = 908
Score = 72.4 bits (176), Expect = 4e-12
Identities = 31/58 (53%), Positives = 42/58 (71%)
Frame = -1
Query: 588 LSISDCNKLKTVPDGLKFVTGLRELEIRWMPTSFKTRLGTAGEDYHKVQHVPSIVFFN 415
L+I DC KLK +PDGLK++T L+EL+I M +K +L GEDY+KVQH+P + F N
Sbjct: 848 LTIDDCKKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDVQFIN 905
>gb|AAL32592.1| disease resistance protein RPP8 [Arabidopsis thaliana]
Length = 908
Score = 72.4 bits (176), Expect = 4e-12
Identities = 31/58 (53%), Positives = 42/58 (71%)
Frame = -1
Query: 588 LSISDCNKLKTVPDGLKFVTGLRELEIRWMPTSFKTRLGTAGEDYHKVQHVPSIVFFN 415
L+I DC KLK +PDGLK++T L+EL+I M +K +L GEDY+KVQH+P + F N
Sbjct: 848 LTIDDCKKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDVQFIN 905
>pir||T48898 disease resistance protein RPP8 [validated] - Arabidopsis thaliana
gi|3928862|gb|AAC83165.1| disease resistance protein RPP8
[Arabidopsis thaliana]
Length = 906
Score = 72.0 bits (175), Expect = 5e-12
Identities = 31/58 (53%), Positives = 42/58 (71%)
Frame = -1
Query: 588 LSISDCNKLKTVPDGLKFVTGLRELEIRWMPTSFKTRLGTAGEDYHKVQHVPSIVFFN 415
L+I DC KLK +PDGLK++T L+EL+I M +K +L GEDY+KVQH+P + F N
Sbjct: 846 LTIHDCEKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDVQFIN 903
>gb|AAF36987.1|AF234174_1 viral resistance protein [Arabidopsis thaliana]
Length = 909
Score = 72.0 bits (175), Expect = 5e-12
Identities = 31/58 (53%), Positives = 42/58 (71%)
Frame = -1
Query: 588 LSISDCNKLKTVPDGLKFVTGLRELEIRWMPTSFKTRLGTAGEDYHKVQHVPSIVFFN 415
L+I DC KLK +PDGLK++T L+EL+I M +K +L GEDY+KVQH+P + F N
Sbjct: 849 LTIHDCEKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDVQFIN 906
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,112,408
Number of Sequences: 1393205
Number of extensions: 10043413
Number of successful extensions: 23955
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 22957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23932
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
