Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001145A_C01 KMC001145A_c01
(475 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO16559.1| mitogen-activated protein kinase [Triticum aestivum] 48 6e-05
ref|NP_200643.1| MAP kinase; protein id: At5g58350.1, supported ... 48 6e-05
gb|AAO18444.1| hypothetical protein [Oryza sativa (japonica cult... 41 0.006
gb|AAA21156.2| Hypothetical protein C26E6.2 [Caenorhabditis eleg... 37 0.081
ref|NP_498049.1| Putative nuclear protein, nematode specific [Ca... 37 0.081
>gb|AAO16559.1| mitogen-activated protein kinase [Triticum aestivum]
Length = 640
Score = 47.8 bits (112), Expect = 6e-05
Identities = 29/57 (50%), Positives = 36/57 (62%), Gaps = 1/57 (1%)
Frame = -2
Query: 357 RLKRIHSYVDVRRPQLQRSLMEEMHKRRVIKTVGAVENFGFQD-PEEGGCFSC*SST 190
R+ R S VDVR L R+L+EE++KR TVGAVEN GF+ P GG S S+T
Sbjct: 560 RMTRNRSMVDVRSQLLHRTLVEELNKRMFFNTVGAVENIGFRRIPGYGGGPSSSSAT 616
>ref|NP_200643.1| MAP kinase; protein id: At5g58350.1, supported by cDNA:
gi_14532571, supported by cDNA: gi_19548056, supported
by cDNA: gi_20302599 [Arabidopsis thaliana]
gi|8777336|dbj|BAA96926.1| MAP kinase [Arabidopsis
thaliana] gi|14532572|gb|AAK64014.1| unknown protein
[Arabidopsis thaliana] gi|19548057|gb|AAL87392.1|
AT5g58350/AT5g58350 [Arabidopsis thaliana]
gi|20302600|dbj|BAB91127.1| Ser/Thr kinase [Arabidopsis
thaliana]
Length = 571
Score = 47.8 bits (112), Expect = 6e-05
Identities = 35/82 (42%), Positives = 38/82 (45%)
Frame = -2
Query: 471 TRFCPREEVMEVDITKQFCNMRMDSHSHRYHGPGHGCRRLKRIHSYVDVRRPQLQRSLME 292
TRFCP E + N S S R L R S VDV+R L RS E
Sbjct: 482 TRFCPEESS---HLQSGQANAYAASSSTN-RSLASDNRTLTRNRSLVDVQRQLLHRSPGE 537
Query: 291 EMHKRRVIKTVGAVENFGFQDP 226
E KRR+ KTVG VE GFQ P
Sbjct: 538 EARKRRLFKTVGDVETVGFQSP 559
>gb|AAO18444.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 179
Score = 41.2 bits (95), Expect = 0.006
Identities = 19/36 (52%), Positives = 25/36 (68%)
Frame = -2
Query: 333 VDVRRPQLQRSLMEEMHKRRVIKTVGAVENFGFQDP 226
VD+R L R+L+EE++KR TVGAV + GF DP
Sbjct: 2 VDMRSQLLHRTLVEELNKRLFFNTVGAVHDIGFPDP 37
>gb|AAA21156.2| Hypothetical protein C26E6.2 [Caenorhabditis elegans]
Length = 470
Score = 37.4 bits (85), Expect = 0.081
Identities = 30/94 (31%), Positives = 45/94 (46%), Gaps = 10/94 (10%)
Frame = +3
Query: 171 IEELSSPWSFNKKNIHLLLDPETQSSQQLQPS*SPSSCASPPSVIFAVVVSSHQH-TSVS 347
I+ L + + N K LLLDP++Q+SQ + PS+ +SP S AV S + TS S
Sbjct: 77 IQTLQALGTTNLKAFSLLLDPQSQTSQLISEDTRPSASSSPSSTATAVSNSGQSNATSTS 136
Query: 348 FSTFDIHVPVHDIYE---------SENPFSCCKT 422
S+ + ++ E S + SCC T
Sbjct: 137 SSSTEPEYKPRNVREKVYADGYIMSFDKKSCCGT 170
>ref|NP_498049.1| Putative nuclear protein, nematode specific [Caenorhabditis
elegans] gi|25395706|pir||G88445 protein C26E6.2
[imported] - Caenorhabditis elegans
Length = 770
Score = 37.4 bits (85), Expect = 0.081
Identities = 30/94 (31%), Positives = 45/94 (46%), Gaps = 10/94 (10%)
Frame = +3
Query: 171 IEELSSPWSFNKKNIHLLLDPETQSSQQLQPS*SPSSCASPPSVIFAVVVSSHQH-TSVS 347
I+ L + + N K LLLDP++Q+SQ + PS+ +SP S AV S + TS S
Sbjct: 377 IQTLQALGTTNLKAFSLLLDPQSQTSQLISEDTRPSASSSPSSTATAVSNSGQSNATSTS 436
Query: 348 FSTFDIHVPVHDIYE---------SENPFSCCKT 422
S+ + ++ E S + SCC T
Sbjct: 437 SSSTEPEYKPRNVREKVYADGYIMSFDKKSCCGT 470
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,710,544
Number of Sequences: 1393205
Number of extensions: 9126781
Number of successful extensions: 23944
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 23033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23934
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
