Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001144A_C01 KMC001144A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181819.1| putative ribose phosphate pyrophosphokinase; pr... 239 1e-62
emb|CAB43602.1| phosphoribosyl pyrophosphate synthase isozyme 4 ... 238 4e-62
gb|AAN04491.1| phosphoribosyl pyrophosphate synthetase [Saccharu... 222 2e-57
dbj|BAB89498.1| putative phosphoribosyl pyrophosphate synthase [... 213 8e-55
pir||T52591 ribose-phosphate diphosphokinase (EC 2.7.6.1) isofor... 212 2e-54
>ref|NP_181819.1| putative ribose phosphate pyrophosphokinase; protein id:
At2g42910.1, supported by cDNA: 35051. [Arabidopsis
thaliana] gi|25529014|pir||T52589 ribose-phosphate
diphosphokinase (EC 2.7.6.1) [imported] - Arabidopsis
thaliana gi|4512664|gb|AAD21718.1| putative ribose
phosphate pyrophosphokinase [Arabidopsis thaliana]
gi|4902472|emb|CAB43553.1| phosphoribosyl diphosphate
synthase [Arabidopsis thaliana]
gi|20197872|gb|AAM15296.1| putative ribose phosphate
pyrophosphokinase [Arabidopsis thaliana]
gi|21593006|gb|AAM64955.1| putative ribose phosphate
pyrophosphokinase [Arabidopsis thaliana]
gi|22136046|gb|AAM91605.1| putative ribose phosphate
pyrophosphokinase [Arabidopsis thaliana]
gi|23197750|gb|AAN15402.1| putative ribose phosphate
pyrophosphokinase [Arabidopsis thaliana]
Length = 337
Score = 239 bits (610), Expect = 1e-62
Identities = 117/154 (75%), Positives = 137/154 (87%), Gaps = 1/154 (0%)
Frame = +3
Query: 33 RMASSAVVKS-PKKSVNLFYSLDSQDLARKVAAHSTDITLQNIRWRSFADGFPNLFINNA 209
++ + A+V KK V+LFY L+ ++LAR +AA S ITLQ+I WRSFADGFPNLFINNA
Sbjct: 13 KICTDAIVSELQKKKVHLFYCLECEELARNIAAESDHITLQSINWRSFADGFPNLFINNA 72
Query: 210 EELRGEHVAFLASFSSPAQVFEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVA 389
++RG+HVAFLASFSSPA +FEQ+SVIY LPRLFVASFTLVLPFFPTGSFERMEEEGDVA
Sbjct: 73 HDIRGQHVAFLASFSSPAVIFEQISVIYLLPRLFVASFTLVLPFFPTGSFERMEEEGDVA 132
Query: 390 TAFTLARMLSNIPVSRGGPTSLVIYDIHALQERF 491
TAFT+AR++SNIP+SRGGPTS+VIYDIHALQERF
Sbjct: 133 TAFTMARIVSNIPISRGGPTSVVIYDIHALQERF 166
>emb|CAB43602.1| phosphoribosyl pyrophosphate synthase isozyme 4 [Spinacia oleracea]
Length = 318
Score = 238 bits (606), Expect = 4e-62
Identities = 118/145 (81%), Positives = 133/145 (91%)
Frame = +3
Query: 57 KSPKKSVNLFYSLDSQDLARKVAAHSTDITLQNIRWRSFADGFPNLFINNAEELRGEHVA 236
K K V LFY +++++LARKVAA S ITLQ+I WRSF DGFPNLFINNA+++RG+HVA
Sbjct: 3 KPNTKQVLLFYCVEAEELARKVAAQSPLITLQSINWRSFDDGFPNLFINNAQDIRGQHVA 62
Query: 237 FLASFSSPAQVFEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTLARML 416
FLA+FSSPA +FEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFT+AR+L
Sbjct: 63 FLAAFSSPAVIFEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARIL 122
Query: 417 SNIPVSRGGPTSLVIYDIHALQERF 491
SNIPVSRGGPTS+VIYDIHALQERF
Sbjct: 123 SNIPVSRGGPTSVVIYDIHALQERF 147
>gb|AAN04491.1| phosphoribosyl pyrophosphate synthetase [Saccharum hybrid cultivar]
Length = 328
Score = 222 bits (565), Expect = 2e-57
Identities = 110/151 (72%), Positives = 129/151 (84%)
Frame = +3
Query: 39 ASSAVVKSPKKSVNLFYSLDSQDLARKVAAHSTDITLQNIRWRSFADGFPNLFINNAEEL 218
A+ K +K ++LFY + ++LA KVAA S I LQ+I WRSF DGFPNLFIN A ++
Sbjct: 6 AAKQKAKKHEKHIHLFYCSECEELALKVAASSDAIELQSINWRSFDDGFPNLFINKAHDI 65
Query: 219 RGEHVAFLASFSSPAQVFEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAF 398
RG+HVAFLASFSSPA +FEQ+SVI+ALP+LF+ASFTLVLPFFPTGSFER+EEEGDVATAF
Sbjct: 66 RGQHVAFLASFSSPAVIFEQISVIFALPKLFIASFTLVLPFFPTGSFERVEEEGDVATAF 125
Query: 399 TLARMLSNIPVSRGGPTSLVIYDIHALQERF 491
TLAR+LS IP SRGGPTS+VIYDIHALQERF
Sbjct: 126 TLARILSMIPKSRGGPTSVVIYDIHALQERF 156
>dbj|BAB89498.1| putative phosphoribosyl pyrophosphate synthase [Oryza sativa
(japonica cultivar-group)]
Length = 409
Score = 213 bits (543), Expect = 8e-55
Identities = 101/141 (71%), Positives = 127/141 (89%)
Frame = +3
Query: 69 KSVNLFYSLDSQDLARKVAAHSTDITLQNIRWRSFADGFPNLFINNAEELRGEHVAFLAS 248
K+V LF+ + ++LA +V A + DI L++I WR+FADGFPNLFI+NA +RG+HVAFLAS
Sbjct: 97 KNVLLFHCEEMRELAEQVVARNDDIELRSISWRTFADGFPNLFISNAHTIRGQHVAFLAS 156
Query: 249 FSSPAQVFEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTLARMLSNIP 428
FSSP+ +FEQLS+IYALP+LF++SFTL+LPFFPTG+ ERME+EGDVATAFTLAR+LSNIP
Sbjct: 157 FSSPSVIFEQLSIIYALPKLFISSFTLILPFFPTGTSERMEDEGDVATAFTLARILSNIP 216
Query: 429 VSRGGPTSLVIYDIHALQERF 491
+SRGGP+SLVI+DIHALQERF
Sbjct: 217 ISRGGPSSLVIFDIHALQERF 237
>pir||T52591 ribose-phosphate diphosphokinase (EC 2.7.6.1) isoform 3 [validated]
- Arabidopsis thaliana gi|4902470|emb|CAB43552.1|
phosphoribosyl diphosphate synthase [Arabidopsis
thaliana]
Length = 326
Score = 212 bits (539), Expect = 2e-54
Identities = 106/151 (70%), Positives = 126/151 (83%)
Frame = +3
Query: 39 ASSAVVKSPKKSVNLFYSLDSQDLARKVAAHSTDITLQNIRWRSFADGFPNLFINNAEEL 218
A+S K V LF+S +++DLA ++ A S I L++I W+ F DGFPNLFI NA+ +
Sbjct: 4 ATSESGSKSSKRVCLFHSDETRDLAERIVAKSDCIELRSINWKKFDDGFPNLFIQNAQGI 63
Query: 219 RGEHVAFLASFSSPAQVFEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAF 398
RG+HVAFLASFSSPA +FEQLSVIYALP+LFV+SFTLVLPFFPTG+ ERME+EGDVATAF
Sbjct: 64 RGQHVAFLASFSSPAVIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAF 123
Query: 399 TLARMLSNIPVSRGGPTSLVIYDIHALQERF 491
TLAR+LSNIP SRGGPTSLV +DIHALQERF
Sbjct: 124 TLARILSNIPTSRGGPTSLVTFDIHALQERF 154
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,773,258
Number of Sequences: 1393205
Number of extensions: 11300490
Number of successful extensions: 119921
Number of sequences better than 10.0: 170
Number of HSP's better than 10.0 without gapping: 45847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92893
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
