Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001141A_C01 KMC001141A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC05755.1| seven transmembrane helix receptor [Homo sapiens] 27 2.7
gb|AAC05758.1| NADH dehydrogenase subunit 1 [Dalbulus gelbus] 33 2.8
ref|NP_615744.1| proteophosphoglycan [Methanosarcina acetivorans... 33 3.7
gb|AAC05768.1| NADH dehydrogenase subunit 1 [Macrosteles quadril... 32 4.8
pir||A35349 H+-transporting ATP synthase protein 6 homolog - Try... 32 4.8
>dbj|BAC05755.1| seven transmembrane helix receptor [Homo sapiens]
Length = 224
Score = 26.9 bits (58), Expect(2) = 2.7
Identities = 11/17 (64%), Positives = 15/17 (87%)
Frame = -3
Query: 313 KTIMLVLFLPFYLFSWM 263
+TI+LVLFL FY+F+ M
Sbjct: 22 ETILLVLFLSFYIFTLM 38
Score = 25.0 bits (53), Expect(2) = 2.7
Identities = 12/43 (27%), Positives = 19/43 (43%)
Frame = -2
Query: 161 LYVGLLYVGLLSLFLREYMLIGRQSSVSCFYPQASGPVMICHI 33
L + L V L Y + + S F+P S P M+C++
Sbjct: 41 LLILLAIVSSARLHTPMYFFLCKLSVFDLFFPSVSSPKMLCYL 83
>gb|AAC05758.1| NADH dehydrogenase subunit 1 [Dalbulus gelbus]
Length = 310
Score = 33.1 bits (74), Expect = 2.8
Identities = 31/121 (25%), Positives = 49/121 (39%), Gaps = 5/121 (4%)
Frame = -1
Query: 471 ALFCSILIPLVFNEIGAQVYIYHHMSEGSNNTYGIIC*NKFLSLLICALGC--SGKRSCW 298
+LF +L P N + + + +S S YG++ + + LGC S ++
Sbjct: 82 SLFIWVLFPFYVNCVEFDLGLLFFLSCSSMGVYGLMVCGWSSNSIYSMLGCIRSVSQAIS 141
Query: 297 FSFFLFIFLVGCLVRSSPLFGLRETSRPFMGYILYMATYAYRF---SLSICWFALCWFAF 127
+ L + L+G F L S FM Y Y + F L CW + CW+A
Sbjct: 142 YEVSLSMILLG--------FFLLIDSYSFMDYYFYQHFVWFSFLSLPLCFCWLS-CWYAE 192
Query: 126 T 124
T
Sbjct: 193 T 193
>ref|NP_615744.1| proteophosphoglycan [Methanosarcina acetivorans str. C2A]
gi|19914595|gb|AAM04224.1| proteophosphoglycan
[Methanosarcina acetivorans str. C2A]
Length = 146
Score = 32.7 bits (73), Expect = 3.7
Identities = 24/87 (27%), Positives = 35/87 (39%), Gaps = 2/87 (2%)
Frame = -1
Query: 291 FFLFIFLVGCLVRSSPLFGLRETSRPFMGYILYMATYAYRFSLSICWFALCWFAFTVFEG 112
FF+ F VG S G S F+GY + ++Y F S W +F + G
Sbjct: 57 FFVSHFFVGYFFVSHFFVGYFFVSHFFVGYFAFRGNFSYSFLFS-------WGSFFSYGG 109
Query: 111 VYAYR--PTVKCKLFLSSSIRACDDLS 37
+ YR + C + S C+D S
Sbjct: 110 FFVYRFFCSFFCCFLTALSTAGCEDNS 136
>gb|AAC05768.1| NADH dehydrogenase subunit 1 [Macrosteles quadrilineatus]
Length = 310
Score = 32.3 bits (72), Expect = 4.8
Identities = 32/115 (27%), Positives = 45/115 (38%), Gaps = 4/115 (3%)
Frame = -1
Query: 471 ALFCSILIPLVFNEIGAQVYIYHHMSEGSNNTYGI-IC---*NKFLSLLICALGCSGKRS 304
+LF +L P N I + + + GS + YG+ IC N S+L C S S
Sbjct: 82 SLFMWVLFPYYVNCIDFDMSLLFFLCCGSLSIYGLMICGWSSNSIYSMLGCIRSVSQAVS 141
Query: 303 CWFSFFLFIFLVGCLVRSSPLFGLRETSRPFMGYILYMATYAYRFSLSICWFALC 139
SF L + LV S F Y + + F L +CWF+ C
Sbjct: 142 YEVSFTLILLCFFMLVDSYSFM-------DFYYYSNILWFFFLSFPLFLCWFSCC 189
>pir||A35349 H+-transporting ATP synthase protein 6 homolog - Trypanosoma brucei
mitochondrion
Length = 214
Score = 32.3 bits (72), Expect = 4.8
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = -3
Query: 340 THLCFRMFGKTIMLV----LFLPFYLFSWMSCPVIPSVWVEGNESPIYGVYFIHGYICIQ 173
+ LCF ++ +ML+ LF F L+ ++ V +W ++ +Y + Y CI
Sbjct: 24 SRLCFIVYPNCLMLIFDFLLFCLFDLYLFVGLCVFLLLWFM-----LFNLYSLILYYCIT 78
Query: 172 IFIVYMLVCFMLVCFHCF*GSICL*AD 92
+Y+L C + + + F C D
Sbjct: 79 YLNLYLLFCIVFLLYIAFLFLFCFLCD 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,172,852
Number of Sequences: 1393205
Number of extensions: 10733166
Number of successful extensions: 26080
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26036
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
