Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001139A_C01 KMC001139A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198248.1| putative protein; protein id: At5g28960.1 [Arab... 203 1e-51
ref|NP_198243.1| putative protein; protein id: At5g28910.1 [Arab... 202 2e-51
ref|NP_523860.2| zipper CG15792-PA gi|7291892|gb|AAF47311.1| CG1... 33 1.7
sp|Q99323|MYSN_DROME Myosin heavy chain, non-muscle (Zipper prot... 33 2.2
gb|AAM22133.1|AF478169_26 unknown [porcine lymphotropic herpesvi... 33 2.2
>ref|NP_198248.1| putative protein; protein id: At5g28960.1 [Arabidopsis thaliana]
Length = 457
Score = 203 bits (517), Expect = 1e-51
Identities = 93/129 (72%), Positives = 113/129 (87%)
Frame = -2
Query: 542 ACEMKVVEFEEYMQLADRIRRHFPNLNSIWLSTEMQQVIDKTREYPNWNFHYTKIRRQVK 363
ACEM+V EEYM LADRI+ FP LN IWLSTEM++V+DK+++Y +W F+YT++ RQV
Sbjct: 330 ACEMRVAALEEYMHLADRIKDRFPELNKIWLSTEMKEVVDKSKDYDHWRFYYTEVARQVG 389
Query: 362 TNMSMADYEASLGRETSTNYPMVNFLMAADSDFFVGVLGSTWSFLIDGMRNTGGKVMAGF 183
N S+A+YEASLGRETSTNYP+VNFLMA+++DFFVG LGSTW FLIDGMRNTGGKVM+G+
Sbjct: 390 -NKSIAEYEASLGRETSTNYPLVNFLMASEADFFVGALGSTWCFLIDGMRNTGGKVMSGY 448
Query: 182 LSVNKDRFW 156
LSVNKDRFW
Sbjct: 449 LSVNKDRFW 457
>ref|NP_198243.1| putative protein; protein id: At5g28910.1 [Arabidopsis thaliana]
Length = 459
Score = 202 bits (514), Expect = 2e-51
Identities = 93/129 (72%), Positives = 112/129 (86%)
Frame = -2
Query: 542 ACEMKVVEFEEYMQLADRIRRHFPNLNSIWLSTEMQQVIDKTREYPNWNFHYTKIRRQVK 363
ACEM+V EEYM LADRIR FP LN IWLSTEM++V+D++++Y +W F+YT++ RQV
Sbjct: 332 ACEMRVAALEEYMHLADRIRDRFPELNRIWLSTEMKEVVDRSKDYAHWRFYYTEVARQVG 391
Query: 362 TNMSMADYEASLGRETSTNYPMVNFLMAADSDFFVGVLGSTWSFLIDGMRNTGGKVMAGF 183
N SMA+YEASLGRE STNYP+VNFLMA+++DFFVG LGSTW FLIDGMRNTGGKVM+G+
Sbjct: 392 -NKSMAEYEASLGREMSTNYPLVNFLMASEADFFVGALGSTWCFLIDGMRNTGGKVMSGY 450
Query: 182 LSVNKDRFW 156
LSVNKDRFW
Sbjct: 451 LSVNKDRFW 459
>ref|NP_523860.2| zipper CG15792-PA gi|7291892|gb|AAF47311.1| CG15792-PA [Drosophila
melanogaster]
Length = 2056
Score = 33.5 bits (75), Expect = 1.7
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -2
Query: 467 LNSIWLSTEMQQVIDKTREYPNWNFHYTKIR--RQVKTNMSMADYEASLGRETSTNYPMV 294
+ S WL+ + + + EYP N HY K RQ + + +A A + E N P +
Sbjct: 1 MKSAWLALKSKSALHPKSEYPVSNIHYPKAANYRQTRNYLEIA---AKMSEEVDRNDPEL 57
Query: 293 NFLMAADSDFFVGVLGSTWS 234
+L + F + W+
Sbjct: 58 KYLSVERNQFNDPATQAEWT 77
>sp|Q99323|MYSN_DROME Myosin heavy chain, non-muscle (Zipper protein) (Myosin II)
gi|103264|pir||A36014 myosin heavy chain, nonmuscle -
fruit fly (Drosophila melanogaster)
Length = 2017
Score = 33.1 bits (74), Expect = 2.2
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -2
Query: 467 LNSIWLSTEMQQVIDKTREYPNWNFHYTKIR--RQVKTNMSMADYEASLGRETSTNYPMV 294
+ S WL+ + + + EYP N HY K RQ + + +A A + E N P +
Sbjct: 1 MKSAWLALKSKSALHPKSEYPVSNIHYPKAANYRQTRNYLEIA---AKMSEEVDRNDPEL 57
Query: 293 NFLMAADSDF 264
+L + F
Sbjct: 58 KYLSVERNQF 67
>gb|AAM22133.1|AF478169_26 unknown [porcine lymphotropic herpesvirus 1]
Length = 326
Score = 33.1 bits (74), Expect = 2.2
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 6 KGTWQKIIDSRKQV---QVFLILHSNNTTIYTQRITL*PWLQII*Y 134
K TWQKI+DS K V + +L S N + Q + PWL ++ Y
Sbjct: 117 KSTWQKILDSDKNVIINEALELLSSPNHWCFCQPVDPLPWLWLLFY 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,498,736
Number of Sequences: 1393205
Number of extensions: 10138587
Number of successful extensions: 23399
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23393
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
