Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001123A_C01 KMC001123A_c01
(490 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187680.1| putative DNA gyrase subunit A; protein id: At3g... 80 1e-20
gb|AAF19580.1|AC011708_23 putative DNA gyrase A subunit [Arabido... 80 1e-19
ref|NP_207495.1| DNA gyrase, sub A (gyrA) [Helicobacter pylori 2... 74 7e-13
ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99] ... 74 7e-13
gb|AAA74376.1| gyrase A 74 7e-13
>ref|NP_187680.1| putative DNA gyrase subunit A; protein id: At3g10690.1 [Arabidopsis
thaliana] gi|12322780|gb|AAG51377.1|AC011560_9 putative
DNA gyrase subunit A; 1114-7603 [Arabidopsis thaliana]
Length = 917
Score = 79.7 bits (195), Expect(2) = 1e-20
Identities = 38/50 (76%), Positives = 42/50 (84%)
Frame = +2
Query: 341 KRPRRRYMSYAMSVVLGRALPDDRDGLKPVHRRILLAMHELGLSSKKSFK 490
K YMSYA+SV+LGRALPD RDGLKPVHRRIL AMHELG+SSKK +K
Sbjct: 108 KEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYK 157
Score = 41.2 bits (95), Expect(2) = 1e-20
Identities = 42/114 (36%), Positives = 51/114 (43%), Gaps = 13/114 (11%)
Frame = +1
Query: 55 LNPHLLHS----PSSSISMALSSALRV----LRLSPFVSLTRPSPL----RLASSELRFL 198
+ P L HS P+ + M+LSS LR+ LR S F PL R S RF
Sbjct: 1 MTPVLCHSTASIPNPNSLMSLSSTLRLSSSLLRRS-FFRFPLTDPLCRLRRTEPSATRFF 59
Query: 199 SSATRRRPATAVRASGNGSVTVVN-GNSNSGNNGDGRSEGRILTKELHKEATEA 357
SS T R V A G V +N+G E RI+ ELHKEATE+
Sbjct: 60 SSRTPRSGKFVVGAGKRGDEQVKEESGANNGGLVVSGDESRIVPFELHKEATES 113
>gb|AAF19580.1|AC011708_23 putative DNA gyrase A subunit [Arabidopsis thaliana]
Length = 899
Score = 79.7 bits (195), Expect(2) = 1e-19
Identities = 38/50 (76%), Positives = 42/50 (84%)
Frame = +2
Query: 341 KRPRRRYMSYAMSVVLGRALPDDRDGLKPVHRRILLAMHELGLSSKKSFK 490
K YMSYA+SV+LGRALPD RDGLKPVHRRIL AMHELG+SSKK +K
Sbjct: 90 KEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYK 139
Score = 37.4 bits (85), Expect(2) = 1e-19
Identities = 37/96 (38%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Frame = +1
Query: 97 MALSSALRV----LRLSPFVSLTRPSPL----RLASSELRFLSSATRRRPATAVRASGNG 252
M+LSS LR+ LR S F PL R S RF SS T R V A G
Sbjct: 1 MSLSSTLRLSSSLLRRS-FFRFPLTDPLCRLRRTEPSATRFFSSRTPRSGKFVVGAGKRG 59
Query: 253 SVTVVN-GNSNSGNNGDGRSEGRILTKELHKEATEA 357
V +N+G E RI+ ELHKEATE+
Sbjct: 60 DEQVKEESGANNGGLVVSGDESRIVPFELHKEATES 95
>ref|NP_207495.1| DNA gyrase, sub A (gyrA) [Helicobacter pylori 26695]
gi|2507466|sp|P48370|GYRA_HELPY DNA gyrase subunit A
gi|7437469|pir||E64607 DNA gyrase, sub A - Helicobacter
pylori (strain 26695) gi|2313826|gb|AAD07753.1| DNA
gyrase, sub A (gyrA) [Helicobacter pylori 26695]
Length = 827
Score = 74.3 bits (181), Expect = 7e-13
Identities = 33/44 (75%), Positives = 41/44 (93%)
Frame = +2
Query: 359 YMSYAMSVVLGRALPDDRDGLKPVHRRILLAMHELGLSSKKSFK 490
Y++Y+MSV++GRALPD RDGLKPVHRRIL AMHELGL+SK ++K
Sbjct: 25 YLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYK 68
>ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99]
gi|9789773|sp|Q9ZLD9|GYRA_HELPJ DNA gyrase subunit A
gi|7437467|pir||E71906 DNA gyrase chain A - Helicobacter
pylori (strain J99) gi|4155194|gb|AAD06219.1| DNA GYRASE
SUBUNIT A [Helicobacter pylori J99]
Length = 828
Score = 74.3 bits (181), Expect = 7e-13
Identities = 33/44 (75%), Positives = 41/44 (93%)
Frame = +2
Query: 359 YMSYAMSVVLGRALPDDRDGLKPVHRRILLAMHELGLSSKKSFK 490
Y++Y+MSV++GRALPD RDGLKPVHRRIL AMHELGL+SK ++K
Sbjct: 25 YLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYK 68
>gb|AAA74376.1| gyrase A
Length = 826
Score = 74.3 bits (181), Expect = 7e-13
Identities = 33/44 (75%), Positives = 41/44 (93%)
Frame = +2
Query: 359 YMSYAMSVVLGRALPDDRDGLKPVHRRILLAMHELGLSSKKSFK 490
Y++Y+MSV++GRALPD RDGLKPVHRRIL AMHELGL+SK ++K
Sbjct: 25 YLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYK 68
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.317 0.130 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,009,579
Number of Sequences: 1393205
Number of extensions: 13077184
Number of successful extensions: 122984
Number of sequences better than 10.0: 2347
Number of HSP's better than 10.0 without gapping: 79211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112521
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
