Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001122A_C01 KMC001122A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172020.1| hypothetical protein; protein id: At1g05280.1 [... 40 0.019
pir||D86187 hypothetical protein [imported] - Arabidopsis thalia... 40 0.019
gb|AAL71848.1| WssH [Pseudomonas fluorescens] 32 5.1
emb|CAB05981.1| cytochrome b [Eubazus semirugosus] 32 5.1
ref|NP_252026.1| probable MFS transporter [Pseudomonas aeruginos... 31 6.7
>ref|NP_172020.1| hypothetical protein; protein id: At1g05280.1 [Arabidopsis
thaliana]
Length = 461
Score = 39.7 bits (91), Expect = 0.019
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = +3
Query: 312 TTLQSLVNFLLVSSSFCVLYVLISVLFLGTSKLVHVHSSSQELS---TPTTLDHLVFGIA 482
T + +VN +L+ ++Y+LIS L + +H + SS + +PT ++H+VFGI
Sbjct: 19 TIVTRMVNCILLFVFILLVYLLISASRLQSKNSIHAYFSSSDQDQSQSPTKIEHIVFGIG 78
Query: 483 SSKSS 497
SS S
Sbjct: 79 SSAIS 83
>pir||D86187 hypothetical protein [imported] - Arabidopsis thaliana
gi|2388569|gb|AAB71450.1| Similar to hypothetical
protein PID|e327464 (gb|Z97338). [Arabidopsis thaliana]
Length = 479
Score = 39.7 bits (91), Expect = 0.019
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = +3
Query: 312 TTLQSLVNFLLVSSSFCVLYVLISVLFLGTSKLVHVHSSSQELS---TPTTLDHLVFGIA 482
T + +VN +L+ ++Y+LIS L + +H + SS + +PT ++H+VFGI
Sbjct: 19 TIVTRMVNCILLFVFILLVYLLISASRLQSKNSIHAYFSSSDQDQSQSPTKIEHIVFGIG 78
Query: 483 SSKSS 497
SS S
Sbjct: 79 SSAIS 83
>gb|AAL71848.1| WssH [Pseudomonas fluorescens]
Length = 468
Score = 31.6 bits (70), Expect = 5.1
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 153 RDRRLRKLWIFLTFQVSYYSMCGTMVGM*EE--TWYGPFPLDW 31
R R L L +F T + +Y + G E TWYG PLDW
Sbjct: 75 RVRLLIALIVFNTAVLCWYKYANIVAGTVSEVITWYGAMPLDW 117
>emb|CAB05981.1| cytochrome b [Eubazus semirugosus]
Length = 144
Score = 31.6 bits (70), Expect = 5.1
Identities = 25/82 (30%), Positives = 38/82 (45%), Gaps = 10/82 (12%)
Frame = +3
Query: 153 GGSLLNYMTQNLAYTHH---------MNLVQLSHH*FSGFCRIRPTFPPGLTLNNMQL-F 302
GG +N T N YT H M L+ L + +G P GL NN ++ F
Sbjct: 27 GGFSVNNSTLNRFYTFHFLMPFILLIMVLIHLMYLHETG-----SNNPLGLNSNNYKIIF 81
Query: 303 HKHTTLQSLVNFLLVSSSFCVL 368
H + TL+ L+ FL++ F ++
Sbjct: 82 HNYFTLKDLMGFLMILLMFMII 103
>ref|NP_252026.1| probable MFS transporter [Pseudomonas aeruginosa PA01]
gi|11351492|pir||B83228 probable MFS transporter PA3336
[imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9949468|gb|AAG06724.1|AE004756_2 probable MFS
transporter [Pseudomonas aeruginosa PAO1]
Length = 388
Score = 31.2 bits (69), Expect = 6.7
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = -1
Query: 93 MCGTMVGM*EETWYGPFPLDWYGWLVLFF 7
M GT++G+ TW G +WYGW FF
Sbjct: 137 MVGTVLGLPVATWLG----EWYGWRASFF 161
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,298,093
Number of Sequences: 1393205
Number of extensions: 9201690
Number of successful extensions: 21774
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21761
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
