Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001121A_C01 KMC001121A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA17699.1| Drosophila melanogaster CG15040 gene product [Pla... 32 4.8
dbj|BAC41211.1| BtrD [Bacillus circulans] 28 7.3
>gb|EAA17699.1| Drosophila melanogaster CG15040 gene product [Plasmodium yoelii
yoelii]
Length = 840
Score = 32.3 bits (72), Expect = 4.8
Identities = 33/117 (28%), Positives = 54/117 (45%), Gaps = 4/117 (3%)
Frame = +1
Query: 16 KSTKINSNRLKKT*LKVIISHELHKNLKQNN----SSA*LQSVLFLHNENSERKYHRGIH 183
++T+I N LK K+I +E +KN+ +NN S+ Q++ N NS + I
Sbjct: 487 RNTQIGKNCLKS---KLIFIYEYYKNINRNNEKNISNGIRQNINRSFNSNSSFE----IK 539
Query: 184 T**TSHCPKYLSNISIKESLSRNSSVQIHTTRGIMARQLRSLMNEPVLNKI*HSMQN 354
T S + N S NSS QI+T + ++ EP ++ HS++N
Sbjct: 540 TNKDSSIIPSIVNFDSLNSYKSNSSEQINT----HDNNINTVQVEPTFSEKKHSIEN 592
>dbj|BAC41211.1| BtrD [Bacillus circulans]
Length = 275
Score = 27.7 bits (60), Expect(2) = 7.3
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +2
Query: 377 WRRDNE---KKWRSLSPKNSKFHPISRSQLVQY 466
W++ NE WR L +NS + P+ R+ +++Y
Sbjct: 192 WQQHNEFLQDGWRQLELRNSVYTPVKRAAVLEY 224
Score = 22.7 bits (47), Expect(2) = 7.3
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = +3
Query: 231 QGKPVKKFFCSDPYYQRHN 287
QG PV F+ PY+Q+HN
Sbjct: 179 QGYPVL-FYSEFPYWQQHN 196
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,230,432
Number of Sequences: 1393205
Number of extensions: 11493089
Number of successful extensions: 26949
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26943
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
