Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001120A_C06 KMC001120A_c06
(713 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194094.1| putative protein; protein id: At4g23630.1, supp... 141 1e-36
dbj|BAB32723.1| P0492F05.25 [Oryza sativa (japonica cultivar-gro... 134 8e-36
dbj|BAB89453.1| OSJNBb0021A09.5 [Oryza sativa (japonica cultivar... 134 1e-34
ref|NP_198975.1| putative protein; protein id: At5g41600.1, supp... 144 2e-34
ref|NP_176592.1| hypothetical protein; protein id: At1g64090.1, ... 145 7e-34
>ref|NP_194094.1| putative protein; protein id: At4g23630.1, supported by cDNA:
39185., supported by cDNA: gi_15215585 [Arabidopsis
thaliana] gi|7486733|pir||T05595 hypothetical protein
F9D16.100 - Arabidopsis thaliana
gi|4454032|emb|CAA23029.1| putative protein [Arabidopsis
thaliana] gi|7269211|emb|CAB79318.1| putative protein
[Arabidopsis thaliana] gi|15215586|gb|AAK91338.1|
AT4g23630/F9D16_100 [Arabidopsis thaliana]
gi|21593466|gb|AAM65433.1| unknown [Arabidopsis
thaliana] gi|22137240|gb|AAM91465.1| AT4g23630/F9D16_100
[Arabidopsis thaliana]
Length = 275
Score = 141 bits (356), Expect(2) = 1e-36
Identities = 71/102 (69%), Positives = 83/102 (80%)
Frame = -2
Query: 712 IPQVHIPEEPVLQLASALRADINRAFAVLRDIASGKDLKKFLSVIAGLWVFSVVGSWTNF 533
IP+VHIPEEP+LQLAS LR +INR F+ LR+IASG+DLKKFL IAGLWV S++G NF
Sbjct: 154 IPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNF 213
Query: 532 LTLFYIAFVLLHTVPVLYEKYEDQVDSIGEKATFTEFKKQYA 407
LTL YIA VLL TVP+ Y+KYED+VD +GEKA E KKQYA
Sbjct: 214 LTLAYIALVLLFTVPLAYDKYEDKVDPLGEKA-MIELKKQYA 254
Score = 34.3 bits (77), Expect(2) = 1e-36
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -3
Query: 423 LRSSMPVFDAKVLSKIPQGPLKDKK 349
L+ V D KVLSKIP GPLK+KK
Sbjct: 249 LKKQYAVLDEKVLSKIPLGPLKNKK 273
>dbj|BAB32723.1| P0492F05.25 [Oryza sativa (japonica cultivar-group)]
gi|20804416|dbj|BAB92114.1| P0443E07.17 [Oryza sativa
(japonica cultivar-group)]
Length = 279
Score = 134 bits (337), Expect(2) = 8e-36
Identities = 68/102 (66%), Positives = 82/102 (79%)
Frame = -2
Query: 712 IPQVHIPEEPVLQLASALRADINRAFAVLRDIASGKDLKKFLSVIAGLWVFSVVGSWTNF 533
IP+V IPE+ V+ +A + R +INRAFA LR IA G+D+KKFL VIAGLW+ SV+GS NF
Sbjct: 159 IPEVIIPEDLVVNIALSTRYEINRAFANLRQIALGRDIKKFLIVIAGLWLLSVLGSCCNF 218
Query: 532 LTLFYIAFVLLHTVPVLYEKYEDQVDSIGEKATFTEFKKQYA 407
LTL YI FV+LHTVP+LYEKYEDQ+DS GEK + E KKQYA
Sbjct: 219 LTLVYIVFVVLHTVPILYEKYEDQIDSYGEKG-WVEIKKQYA 259
Score = 38.5 bits (88), Expect(2) = 8e-36
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = -3
Query: 423 LRSSMPVFDAKVLSKIPQGPLKDKKN 346
++ V DAKVLSK+P+GPLKDKK+
Sbjct: 254 IKKQYAVLDAKVLSKVPRGPLKDKKH 279
>dbj|BAB89453.1| OSJNBb0021A09.5 [Oryza sativa (japonica cultivar-group)]
Length = 253
Score = 134 bits (338), Expect(2) = 1e-34
Identities = 68/102 (66%), Positives = 81/102 (78%)
Frame = -2
Query: 712 IPQVHIPEEPVLQLASALRADINRAFAVLRDIASGKDLKKFLSVIAGLWVFSVVGSWTNF 533
IP+V IPE+ + +A +LR +INR FA LR+I G+DLKKFL VIAGLW+ SV+GS NF
Sbjct: 133 IPEVKIPEDLTVNIALSLRYEINRGFATLREIGHGRDLKKFLIVIAGLWILSVLGSSCNF 192
Query: 532 LTLFYIAFVLLHTVPVLYEKYEDQVDSIGEKATFTEFKKQYA 407
LTLFYI FV L+TVPVLYEKYED+VD+ GEKA EFKK YA
Sbjct: 193 LTLFYIVFVALYTVPVLYEKYEDKVDAFGEKAEI-EFKKYYA 233
Score = 33.9 bits (76), Expect(2) = 1e-34
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3
Query: 405 VFDAKVLSKIPQGPLKDKKN 346
+F+ K LSKIP+GPLKDKK+
Sbjct: 234 LFEEKCLSKIPKGPLKDKKH 253
>ref|NP_198975.1| putative protein; protein id: At5g41600.1, supported by cDNA:
gi_14334529, supported by cDNA: gi_16323068 [Arabidopsis
thaliana] gi|10178014|dbj|BAB11466.1| contains
similarity to 24 kDa seed maturation
protein~gene_id:MBK23.13 [Arabidopsis thaliana]
gi|14334530|gb|AAK59673.1| unknown protein [Arabidopsis
thaliana] gi|16323069|gb|AAL15269.1| AT5g41600/MBK23_13
[Arabidopsis thaliana] gi|23297540|gb|AAN12890.1|
unknown protein [Arabidopsis thaliana]
Length = 257
Score = 144 bits (362), Expect(2) = 2e-34
Identities = 71/102 (69%), Positives = 84/102 (81%)
Frame = -2
Query: 712 IPQVHIPEEPVLQLASALRADINRAFAVLRDIASGKDLKKFLSVIAGLWVFSVVGSWTNF 533
IP+VHIPE+P+LQL S LR +INR +LR+IASGKD+KKF+ VIAGLWV S++GS NF
Sbjct: 133 IPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNF 192
Query: 532 LTLFYIAFVLLHTVPVLYEKYEDQVDSIGEKATFTEFKKQYA 407
LTLFY A VLL T+PVLYEKYED+VD+ GEKA E KKQYA
Sbjct: 193 LTLFYTATVLLFTIPVLYEKYEDKVDAYGEKA-MREIKKQYA 233
Score = 24.3 bits (51), Expect(2) = 2e-34
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = -3
Query: 393 KVLSKIPQGPLKDKKN 346
KV+SKIP+G L KK+
Sbjct: 242 KVISKIPRGALNKKKD 257
>ref|NP_176592.1| hypothetical protein; protein id: At1g64090.1, supported by cDNA:
gi_17381217 [Arabidopsis thaliana]
gi|6692111|gb|AAF24576.1|AC007764_18 F22C12.15
[Arabidopsis thaliana] gi|17381218|gb|AAL36421.1|
unknown protein [Arabidopsis thaliana]
gi|21436435|gb|AAM51418.1| unknown protein [Arabidopsis
thaliana]
Length = 255
Score = 145 bits (365), Expect = 7e-34
Identities = 76/101 (75%), Positives = 82/101 (80%)
Frame = -2
Query: 712 IPQVHIPEEPVLQLASALRADINRAFAVLRDIASGKDLKKFLSVIAGLWVFSVVGSWTNF 533
IP+VHIPE+ VLQLAS LR +INR F VLRDIASG+DLKKFL VIAGLWV S VGS NF
Sbjct: 129 IPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNF 188
Query: 532 LTLFYIAFVLLHTVPVLYEKYEDQVDSIGEKATFTEFKKQY 410
LTL YIA VLL T+PVLYEKYED+VD GEKA E KKQY
Sbjct: 189 LTLIYIATVLLFTIPVLYEKYEDKVDDFGEKA-MREIKKQY 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 638,790,271
Number of Sequences: 1393205
Number of extensions: 14098502
Number of successful extensions: 37963
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 36651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37948
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
