Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001089A_C01 KMC001089A_c01
(740 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T00757 probable ubiquitin carboxyl terminal hydrolase [impo... 204 1e-51
ref|NP_565944.1| ubiquitin-specific protease 5 (UBP5), putative;... 204 1e-51
pir||T04194 hypothetical protein T4F9.50 - Arabidopsis thaliana ... 172 4e-42
ref|NP_567363.1| putative protein; protein id: At4g10590.1, supp... 172 4e-42
ref|NP_192795.1| putative protein; protein id: At4g10570.1 [Arab... 171 1e-41
>pir||T00757 probable ubiquitin carboxyl terminal hydrolase [imported] -
Arabidopsis thaliana
Length = 914
Score = 204 bits (519), Expect = 1e-51
Identities = 94/113 (83%), Positives = 104/113 (91%)
Frame = -2
Query: 739 KLDLWRLPEVLFIHLKRFSYSRSMKHKLETFVNLPIHDFDLTSYIANENDSRPQLYELYA 560
KLDLWRLPEVL IHLKRFSYSRSMKHKLETFVN PIHD DLT Y+AN+N S+PQLYELYA
Sbjct: 793 KLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDLDLTKYVANKNLSQPQLYELYA 852
Query: 559 LTNHYGTLGSGHYTAHIKLLDENRWYNFDDTHISAISEDEVNTAAAYVLFYRR 401
LTNHYG +GSGHYTAHIKLLD++RWYNFDD+HIS I+ED+V + AAYVLFYRR
Sbjct: 853 LTNHYGGMGSGHYTAHIKLLDDSRWYNFDDSHISHINEDDVKSGAAYVLFYRR 905
>ref|NP_565944.1| ubiquitin-specific protease 5 (UBP5), putative; protein id:
At2g40930.1, supported by cDNA: gi_20466469, supported by
cDNA: gi_6648603 [Arabidopsis thaliana]
gi|6648604|gb|AAF21246.1|AF048705_1 ubiquitin-specific
protease; UBP5 [Arabidopsis thaliana]
gi|20196935|gb|AAB86453.2| ubiquitin-specific protease 5
(UBP5), putative [Arabidopsis thaliana]
gi|20466470|gb|AAM20552.1| putative ubiquitin carboxyl
terminal hydrolase [Arabidopsis thaliana]
gi|23198184|gb|AAN15619.1| putative ubiquitin carboxyl
terminal hydrolase [Arabidopsis thaliana]
Length = 924
Score = 204 bits (519), Expect = 1e-51
Identities = 94/113 (83%), Positives = 104/113 (91%)
Frame = -2
Query: 739 KLDLWRLPEVLFIHLKRFSYSRSMKHKLETFVNLPIHDFDLTSYIANENDSRPQLYELYA 560
KLDLWRLPEVL IHLKRFSYSRSMKHKLETFVN PIHD DLT Y+AN+N S+PQLYELYA
Sbjct: 803 KLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDLDLTKYVANKNLSQPQLYELYA 862
Query: 559 LTNHYGTLGSGHYTAHIKLLDENRWYNFDDTHISAISEDEVNTAAAYVLFYRR 401
LTNHYG +GSGHYTAHIKLLD++RWYNFDD+HIS I+ED+V + AAYVLFYRR
Sbjct: 863 LTNHYGGMGSGHYTAHIKLLDDSRWYNFDDSHISHINEDDVKSGAAYVLFYRR 915
>pir||T04194 hypothetical protein T4F9.50 - Arabidopsis thaliana
gi|4539437|emb|CAB40025.1| putative protein [Arabidopsis
thaliana] gi|7267756|emb|CAB78182.1| putative protein
[Arabidopsis thaliana]
Length = 937
Score = 172 bits (436), Expect = 4e-42
Identities = 72/117 (61%), Positives = 100/117 (84%)
Frame = -2
Query: 739 KLDLWRLPEVLFIHLKRFSYSRSMKHKLETFVNLPIHDFDLTSYIANENDSRPQLYELYA 560
KLDLW+LP++L HLKRF+YSR +K+K++TFVN P+HD DL+ Y+ N+ND + LYELYA
Sbjct: 809 KLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKND-QSYLYELYA 867
Query: 559 LTNHYGTLGSGHYTAHIKLLDENRWYNFDDTHISAISEDEVNTAAAYVLFYRRVRTD 389
++NHYG LG GHYTA+ KL+D+N WY+FDD+H+S+++E E+ +AAYVLFYRRVR++
Sbjct: 868 VSNHYGGLGGGHYTAYAKLIDDNEWYHFDDSHVSSVNESEIKNSAAYVLFYRRVRSE 924
>ref|NP_567363.1| putative protein; protein id: At4g10590.1, supported by cDNA:
gi_15450766 [Arabidopsis thaliana]
gi|15450767|gb|AAK96655.1| putative protein [Arabidopsis
thaliana]
Length = 910
Score = 172 bits (436), Expect = 4e-42
Identities = 72/117 (61%), Positives = 100/117 (84%)
Frame = -2
Query: 739 KLDLWRLPEVLFIHLKRFSYSRSMKHKLETFVNLPIHDFDLTSYIANENDSRPQLYELYA 560
KLDLW+LP++L HLKRF+YSR +K+K++TFVN P+HD DL+ Y+ N+ND + LYELYA
Sbjct: 782 KLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKND-QSYLYELYA 840
Query: 559 LTNHYGTLGSGHYTAHIKLLDENRWYNFDDTHISAISEDEVNTAAAYVLFYRRVRTD 389
++NHYG LG GHYTA+ KL+D+N WY+FDD+H+S+++E E+ +AAYVLFYRRVR++
Sbjct: 841 VSNHYGGLGGGHYTAYAKLIDDNEWYHFDDSHVSSVNESEIKNSAAYVLFYRRVRSE 897
>ref|NP_192795.1| putative protein; protein id: At4g10570.1 [Arabidopsis thaliana]
gi|7487639|pir||T04192 hypothetical protein T4F9.30 -
Arabidopsis thaliana gi|4539435|emb|CAB40023.1| putative
protein [Arabidopsis thaliana] gi|7267754|emb|CAB78180.1|
putative protein [Arabidopsis thaliana]
Length = 928
Score = 171 bits (432), Expect = 1e-41
Identities = 71/117 (60%), Positives = 100/117 (84%)
Frame = -2
Query: 739 KLDLWRLPEVLFIHLKRFSYSRSMKHKLETFVNLPIHDFDLTSYIANENDSRPQLYELYA 560
KLDLW+LP++L HLKRF+YSR +K+K++TFVN P+HD DL+ Y+ N+N + LYELYA
Sbjct: 788 KLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKN-GQSYLYELYA 846
Query: 559 LTNHYGTLGSGHYTAHIKLLDENRWYNFDDTHISAISEDEVNTAAAYVLFYRRVRTD 389
++NHYG LG GHYTA+ KL+D+N+WY+FDD+H+S+++E E+ +AAYVLFYRRVR++
Sbjct: 847 VSNHYGGLGGGHYTAYAKLIDDNKWYHFDDSHVSSVNESEIRNSAAYVLFYRRVRSE 903
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 595,019,640
Number of Sequences: 1393205
Number of extensions: 12450716
Number of successful extensions: 27901
Number of sequences better than 10.0: 561
Number of HSP's better than 10.0 without gapping: 26726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27497
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35469585522
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
