Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001084A_C01 KMC001084A_c01
(509 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F86311 F11A6.2 protein - Arabidopsis thaliana gi|9802741|gb... 189 2e-47
gb|AAN86156.1| unknown protein [Arabidopsis thaliana] 189 2e-47
ref|XP_237152.1| similar to general transcription factor IIIC, p... 70 1e-11
pir||T46268 hypothetical protein DKFZp761E129.1 - human (fragmen... 70 1e-11
dbj|BAB15638.1| unnamed protein product [Homo sapiens] 70 1e-11
>pir||F86311 F11A6.2 protein - Arabidopsis thaliana
gi|9802741|gb|AAF99810.1|AC034257_2 Unknown protein
[Arabidopsis thaliana]
Length = 815
Score = 189 bits (480), Expect = 2e-47
Identities = 90/117 (76%), Positives = 100/117 (84%)
Frame = -1
Query: 509 LGLRLQNKHQCVLQGLAFLYNNLRICENSQESLYNIARAFHHVGLVTLAALYYEKVIAIC 330
LG RL+N+H+C+ QG AFLYNNLRIC NSQE+LYN+ARA+ HVGLVTLAA YYEKV+AI
Sbjct: 698 LGFRLKNRHECLAQGFAFLYNNLRICSNSQEALYNVARAYQHVGLVTLAASYYEKVLAIY 757
Query: 329 EKDYPIPKLPNEAPDVMENRKPGYCDLRREAAFNLHLIYKKSGALDLARQVLKDHCT 159
EKDY +PKLPNE P V E RKP CDLR+EAA NLHLIYK SGA DLARQVLKDHCT
Sbjct: 758 EKDYTMPKLPNEDPIVAEERKPVNCDLRKEAAHNLHLIYKHSGAFDLARQVLKDHCT 814
>gb|AAN86156.1| unknown protein [Arabidopsis thaliana]
Length = 896
Score = 189 bits (480), Expect = 2e-47
Identities = 90/117 (76%), Positives = 100/117 (84%)
Frame = -1
Query: 509 LGLRLQNKHQCVLQGLAFLYNNLRICENSQESLYNIARAFHHVGLVTLAALYYEKVIAIC 330
LG RL+N+H+C+ QG AFLYNNLRIC NSQE+LYN+ARA+ HVGLVTLAA YYEKV+AI
Sbjct: 779 LGFRLKNRHECLAQGFAFLYNNLRICSNSQEALYNVARAYQHVGLVTLAASYYEKVLAIY 838
Query: 329 EKDYPIPKLPNEAPDVMENRKPGYCDLRREAAFNLHLIYKKSGALDLARQVLKDHCT 159
EKDY +PKLPNE P V E RKP CDLR+EAA NLHLIYK SGA DLARQVLKDHCT
Sbjct: 839 EKDYTMPKLPNEDPIVAEERKPVNCDLRKEAAHNLHLIYKHSGAFDLARQVLKDHCT 895
>ref|XP_237152.1| similar to general transcription factor IIIC, polypeptide 3, 102kDa;
general transcription factor IIIC, polypeptide 3 (102kD);
transcription factor IIIC, 102 kD [Homo sapiens] [Rattus
norvegicus]
Length = 1811
Score = 70.5 bits (171), Expect = 1e-11
Identities = 39/111 (35%), Positives = 59/111 (53%)
Frame = -1
Query: 488 KHQCVLQGLAFLYNNLRICENSQESLYNIARAFHHVGLVTLAALYYEKVIAICEKDYPIP 309
+H +QG +FL L I QES YN+ R H +GL LA YY+K +A+
Sbjct: 1714 RHALTVQGFSFLNRYLSIRGPCQESFYNLGRGLHQLGLTHLAIHYYQKALAL-------- 1765
Query: 308 KLPNEAPDVMENRKPGYCDLRREAAFNLHLIYKKSGALDLARQVLKDHCTL 156
P V+E + DLRR+ A+N+ LIY+ SG +A+++L +C +
Sbjct: 1766 -----PPIVVEGIEVDQLDLRRDIAYNMSLIYQSSGNTAMAQKLLYTYCVI 1811
>pir||T46268 hypothetical protein DKFZp761E129.1 - human (fragment)
gi|6808030|emb|CAB70745.1| hypothetical protein [Homo
sapiens]
Length = 719
Score = 70.5 bits (171), Expect = 1e-11
Identities = 40/111 (36%), Positives = 62/111 (55%)
Frame = -1
Query: 488 KHQCVLQGLAFLYNNLRICENSQESLYNIARAFHHVGLVTLAALYYEKVIAICEKDYPIP 309
+H ++QG +FL L + QES YN+ R H +GL+ LA YY+K +
Sbjct: 622 RHALIVQGFSFLNRYLSLRGPCQESFYNLGRGLHQLGLIHLAIHYYQKAL---------- 671
Query: 308 KLPNEAPDVMENRKPGYCDLRREAAFNLHLIYKKSGALDLARQVLKDHCTL 156
+LP P V+E + DLRR+ A+NL LIY+ SG +A+ +L +C++
Sbjct: 672 ELP---PLVVEGIELDQLDLRRDIAYNLSLIYQSSGNTGMAQTLLYTYCSI 719
>dbj|BAB15638.1| unnamed protein product [Homo sapiens]
Length = 561
Score = 70.5 bits (171), Expect = 1e-11
Identities = 40/111 (36%), Positives = 62/111 (55%)
Frame = -1
Query: 488 KHQCVLQGLAFLYNNLRICENSQESLYNIARAFHHVGLVTLAALYYEKVIAICEKDYPIP 309
+H ++QG +FL L + QES YN+ R H +GL+ LA YY+K +
Sbjct: 464 RHALIVQGFSFLNRYLSLRGPCQESFYNLGRGLHQLGLIHLAIHYYQKAL---------- 513
Query: 308 KLPNEAPDVMENRKPGYCDLRREAAFNLHLIYKKSGALDLARQVLKDHCTL 156
+LP P V+E + DLRR+ A+NL LIY+ SG +A+ +L +C++
Sbjct: 514 ELP---PLVVEGIELDQLDLRRDIAYNLSLIYQSSGNTGMAQTLLYTYCSI 561
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 404,766,911
Number of Sequences: 1393205
Number of extensions: 8023032
Number of successful extensions: 18442
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 18017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18419
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
