Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001072A_C01 KMC001072A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM13851.1| putative ATPase (ISW2) [Arabidopsis thaliana] 205 3e-52
ref|NP_187291.2| putative ATPase (ISW2-like); protein id: At3g06... 205 3e-52
gb|AAF08585.1|AC011623_18 putative ATPase (ISW2-like) [Arabidops... 205 3e-52
gb|AAK53826.1|AC011806_3 Putative SWI/SNF related, matrix associ... 179 2e-44
gb|AAG48831.1|AC084218_1 similar to Arabidopsis thaliana putativ... 89 4e-17
>gb|AAM13851.1| putative ATPase (ISW2) [Arabidopsis thaliana]
Length = 1055
Score = 205 bits (522), Expect = 3e-52
Identities = 110/167 (65%), Positives = 134/167 (79%), Gaps = 1/167 (0%)
Frame = +3
Query: 90 SLSNSSSSSEEEQQIEQINDEEDEEELEAVARPASSGDDEVAE-DIPPDSDEDPAAAEDA 266
S S+ + SSEEE++ + N+EEDEEELEAVAR + S DDEVA D P SD + A ED
Sbjct: 5 SNSDEAFSSEEEEERVKDNEEEDEEELEAVARSSGSDDDEVAAADESPVSDGEAAPVEDD 64
Query: 267 DDDDDEQGGDHVDPEIRKREKSRLREMQIMKKQKVQEILDAQNAAIDADMNNRGKGRLKY 446
+D++ D EI KREK+RL+EMQ +KKQK+QE+L++QNA+IDADMNN+GKGRLKY
Sbjct: 65 YEDEE----DEEKAEISKREKARLKEMQKLKKQKIQEMLESQNASIDADMNNKGKGRLKY 120
Query: 447 LLQQTELFAHFAKGDQSSSVKKSRGRGRHASKVTEEEEDEEYLQEEE 587
LLQQTELFAHFAK D SSS KK++GRGRHASK+TEEEEDEEYL+EEE
Sbjct: 121 LLQQTELFAHFAKSDGSSSQKKAKGRGRHASKITEEEEDEEYLKEEE 167
>ref|NP_187291.2| putative ATPase (ISW2-like); protein id: At3g06400.1, supported by
cDNA: gi_20259461 [Arabidopsis thaliana]
Length = 1055
Score = 205 bits (522), Expect = 3e-52
Identities = 110/167 (65%), Positives = 134/167 (79%), Gaps = 1/167 (0%)
Frame = +3
Query: 90 SLSNSSSSSEEEQQIEQINDEEDEEELEAVARPASSGDDEVAE-DIPPDSDEDPAAAEDA 266
S S+ + SSEEE++ + N+EEDEEELEAVAR + S DDEVA D P SD + A ED
Sbjct: 5 SNSDEAFSSEEEEERVKDNEEEDEEELEAVARSSGSDDDEVAAADESPVSDGEAAPVEDD 64
Query: 267 DDDDDEQGGDHVDPEIRKREKSRLREMQIMKKQKVQEILDAQNAAIDADMNNRGKGRLKY 446
+D++ D EI KREK+RL+EMQ +KKQK+QE+L++QNA+IDADMNN+GKGRLKY
Sbjct: 65 YEDEE----DEEKAEISKREKARLKEMQKLKKQKIQEMLESQNASIDADMNNKGKGRLKY 120
Query: 447 LLQQTELFAHFAKGDQSSSVKKSRGRGRHASKVTEEEEDEEYLQEEE 587
LLQQTELFAHFAK D SSS KK++GRGRHASK+TEEEEDEEYL+EEE
Sbjct: 121 LLQQTELFAHFAKSDGSSSQKKAKGRGRHASKITEEEEDEEYLKEEE 167
>gb|AAF08585.1|AC011623_18 putative ATPase (ISW2-like) [Arabidopsis thaliana]
Length = 1057
Score = 205 bits (522), Expect = 3e-52
Identities = 110/167 (65%), Positives = 134/167 (79%), Gaps = 1/167 (0%)
Frame = +3
Query: 90 SLSNSSSSSEEEQQIEQINDEEDEEELEAVARPASSGDDEVAE-DIPPDSDEDPAAAEDA 266
S S+ + SSEEE++ + N+EEDEEELEAVAR + S DDEVA D P SD + A ED
Sbjct: 5 SNSDEAFSSEEEEERVKDNEEEDEEELEAVARSSGSDDDEVAAADESPVSDGEAAPVEDD 64
Query: 267 DDDDDEQGGDHVDPEIRKREKSRLREMQIMKKQKVQEILDAQNAAIDADMNNRGKGRLKY 446
+D++ D EI KREK+RL+EMQ +KKQK+QE+L++QNA+IDADMNN+GKGRLKY
Sbjct: 65 YEDEE----DEEKAEISKREKARLKEMQKLKKQKIQEMLESQNASIDADMNNKGKGRLKY 120
Query: 447 LLQQTELFAHFAKGDQSSSVKKSRGRGRHASKVTEEEEDEEYLQEEE 587
LLQQTELFAHFAK D SSS KK++GRGRHASK+TEEEEDEEYL+EEE
Sbjct: 121 LLQQTELFAHFAKSDGSSSQKKAKGRGRHASKITEEEEDEEYLKEEE 167
>gb|AAK53826.1|AC011806_3 Putative SWI/SNF related, matrix associated, actin dependent
regulator of chromatin [Oryza sativa]
gi|15528650|dbj|BAB64717.1| putative DNA-dependent
ATPase [Oryza sativa (japonica cultivar-group)]
gi|15528681|dbj|BAB64747.1| putative DNA-dependent
ATPase [Oryza sativa (japonica cultivar-group)]
Length = 1122
Score = 179 bits (455), Expect = 2e-44
Identities = 105/198 (53%), Positives = 129/198 (65%), Gaps = 23/198 (11%)
Frame = +3
Query: 63 SKTQSSSDESLSNSSSSSEEEQQIEQI-------------NDEEDEEELEAVARPASSGD 203
S + ++S S S EEE + E+ +E DEEE+EAV A + +
Sbjct: 16 SSGEEEEEQSDGAGSGSGEEEDEEEEEAPAAAAGEAAGGEEEEVDEEEIEAVTTGAGADE 75
Query: 204 DE----VAEDIPPDSDEDPAAAED------ADDDDDEQGGDHVDPEIRKREKSRLREMQI 353
+E A P + DE+ + ED DDD DE G V + KREK+RL+EMQ
Sbjct: 76 EEEESGAAAAAPGEGDEESQSTEDDEAVVGEDDDADEAEGGAV---VGKREKARLKEMQK 132
Query: 354 MKKQKVQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSVKKSRGRGRH 533
+KKQK+QEILD QNAA+DADMNN+GKGRLKYLLQQTE+FAHFAKG+QS KK RGRGRH
Sbjct: 133 LKKQKIQEILDTQNAAVDADMNNKGKGRLKYLLQQTEIFAHFAKGNQSKE-KKPRGRGRH 191
Query: 534 ASKVTEEEEDEEYLQEEE 587
ASK+TEEEEDEEYL+EEE
Sbjct: 192 ASKMTEEEEDEEYLKEEE 209
>gb|AAG48831.1|AC084218_1 similar to Arabidopsis thaliana putative ATPase (ISW2-like)
(AC011623) [Oryza sativa]
Length = 1137
Score = 89.0 bits (219), Expect = 4e-17
Identities = 66/196 (33%), Positives = 91/196 (45%), Gaps = 15/196 (7%)
Frame = +3
Query: 45 ESMARPSKTQSSSDESLSNSSSSSEEEQQIEQIN------DEEDEEELEAVARPASSGDD 206
E + + +SS E + + EEE+ E+ +E DEEE+EAV A DD
Sbjct: 69 EQVEEEEEEESSVGEEEAEAEGEEEEEEVEEEQGAGEEEEEEVDEEEIEAVTTGAGGDDD 128
Query: 207 E--------VAEDIPPDSDEDPAAAEDADDDDDEQGGDHV-DPEIRKREKSRLREMQIMK 359
+ E+ D++ AA +D +D ++ D + EI KRE+++LREMQ +K
Sbjct: 129 DEEVGDDGGAEEESQSTEDDEVAAGKDGGGEDGDKLEDATGNAEIGKRERAKLREMQKLK 188
Query: 360 KQKVQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSVKKSRGRGRHAS 539
K K+QEILDAQN AIDADM
Sbjct: 189 KHKIQEILDAQNKAIDADM----------------------------------------- 207
Query: 540 KVTEEEEDEEYLQEEE 587
+TEEEEDEEYL+EEE
Sbjct: 208 -MTEEEEDEEYLKEEE 222
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,696,665
Number of Sequences: 1393205
Number of extensions: 11489434
Number of successful extensions: 284283
Number of sequences better than 10.0: 6133
Number of HSP's better than 10.0 without gapping: 85737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184231
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
