Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001068A_C02 KMC001068A_c02
(489 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172488.1| hypothetical protein; protein id: At1g10170.1 [... 47 9e-05
ref|NP_711939.1| hypothetical protein [Leptospira interrogans se... 32 3.8
gb|EAA36031.1| hypothetical protein [Neurospora crassa] 32 3.8
ref|XP_222162.1| similar to MondoA [Homo sapiens] [Rattus norveg... 32 3.8
ref|NP_594233.1| importin beta-1 subunit [Schizosaccharomyces po... 31 6.5
>ref|NP_172488.1| hypothetical protein; protein id: At1g10170.1 [Arabidopsis thaliana]
gi|25402589|pir||D86236 protein F14N23.5 [imported] -
Arabidopsis thaliana gi|4914319|gb|AAD32867.1|AC005489_5
F14N23.5 [Arabidopsis thaliana]
Length = 1188
Score = 47.4 bits (111), Expect = 9e-05
Identities = 38/136 (27%), Positives = 61/136 (43%), Gaps = 12/136 (8%)
Frame = -1
Query: 486 GKSSVVKNAWGGSGGAMNGGETKGNSWKNVV------GWGEDEDLV----TNIQPTMWK- 340
G+S + N WG G+ KGN W+ V WG ++ + T+ Q + +
Sbjct: 1066 GQSPSLNNVWGKLPGSSAWDVDKGNPWRRAVIQESDDSWGAEDSPIGGSSTDAQASALRS 1125
Query: 339 -KLEAPISASLNPWSVLDQVSSSSS*VEAEVSRKHTESNVITHDGGSYLEVLHGGNFDA* 163
K +PI S+N WSVL+ +S+S +E + + S+ T + + G
Sbjct: 1126 AKSNSPIVTSVNRWSVLEPKKASTSTLEPIAQIEESSSSKTTGK-----QPVEGSG---- 1176
Query: 162 EVYDVIDDWEKTFDCE 115
+V+DDWEK CE
Sbjct: 1177 --EEVVDDWEKV--CE 1188
>ref|NP_711939.1| hypothetical protein [Leptospira interrogans serovar lai str.
56601] gi|24195407|gb|AAN48957.1|AE011352_8 hypothetical
protein [Leptospira interrogans serovar lai str. 56601]
Length = 836
Score = 32.0 bits (71), Expect = 3.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -1
Query: 459 WGGSGGAMNGGETKG----NSWKNVVGWGEDEDLVTNIQP 352
W G+GG NGG+ G N WK ++ E + TN+ P
Sbjct: 770 WRGNGGEYNGGDISGEIEANDWKKILSIIERSEHGTNLIP 809
>gb|EAA36031.1| hypothetical protein [Neurospora crassa]
Length = 628
Score = 32.0 bits (71), Expect = 3.8
Identities = 21/62 (33%), Positives = 31/62 (49%), Gaps = 3/62 (4%)
Frame = -1
Query: 465 NAWGGSGGAMNG-GETKGNSWKNVVGW--GEDEDLVTNIQPTMWKKLEAPISASLNPWSV 295
N + G NG G T GN + N G G+D++ NI M +L AP+ NP S+
Sbjct: 48 NGYTNGNGYTNGNGYTNGNGYTNGNGIAPGQDKEKQLNILYIMADQLAAPVMKIYNPESI 107
Query: 294 LD 289
++
Sbjct: 108 VE 109
>ref|XP_222162.1| similar to MondoA [Homo sapiens] [Rattus norvegicus]
Length = 803
Score = 32.0 bits (71), Expect = 3.8
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 365 VTKSSSSPQPTTFFHELPLVSP--PFIAPPDPPHAFLTTEDF 484
+T S P P LPLVSP P + PP PP AFL T+ F
Sbjct: 329 MTLLSPGPAPAPVPTALPLVSPPAPTLNPPTPP-AFLQTQTF 369
>ref|NP_594233.1| importin beta-1 subunit [Schizosaccharomyces pombe]
gi|3183035|sp|O13864|IMB1_SCHPO Importin beta-1 subunit
(Karyopherin beta-1 subunit) (Importin 95)
gi|7492105|pir||T38016 importin beta-1 subunit - fission
yeast (Schizosaccharomyces pombe)
gi|2330731|emb|CAB11082.1| importin beta-1 subunit
[Schizosaccharomyces pombe]
Length = 863
Score = 31.2 bits (69), Expect = 6.5
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +1
Query: 49 DKKGRCESIKTQSFQNMGMHQLFTIKSFLPIIYNIINFLCVKVSTMQHFQIRTTIMSD 222
D+KG + +T ++ +G F+ S LP+I N+++ + ++ T Q + + D
Sbjct: 508 DQKGNENNSRTSGYETLGTLITFSSDSVLPMIANVLSIILTRLETSIQMQSQILDVED 565
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,836,119
Number of Sequences: 1393205
Number of extensions: 9689305
Number of successful extensions: 34784
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 31116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34415
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
