Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001067A_C02 KMC001067A_c02
(794 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564338.1| carbamoylphosphate synthetase, putative; protei... 233 4e-62
emb|CAC85727.1| putative carbamoyl phosphate synthase large subu... 230 7e-62
dbj|BAB90007.1| putative carbamoyl phosphate synthetase [Oryza s... 217 1e-57
ref|ZP_00070947.1| hypothetical protein [Trichodesmium erythraeu... 163 3e-41
ref|NP_442333.1| carbamoyl-phosphate synthase, pyrimidine-specif... 150 6e-38
>ref|NP_564338.1| carbamoylphosphate synthetase, putative; protein id: At1g29900.1,
supported by cDNA: gi_14194124, supported by cDNA:
gi_1477479 [Arabidopsis thaliana] gi|25293882|pir||F86422
carbamoyl-phosphate synthase (ammonia) (EC 6.3.4.16) -
Arabidopsis thaliana gi|1477480|gb|AAB67843.1| carbamoyl
phosphate synthetase large chain [Arabidopsis thaliana]
gi|9972356|gb|AAG10606.1|AC008030_6 carbamoyl phosphate
synthetase large chain (carB) [Arabidopsis thaliana]
gi|14194125|gb|AAK56257.1|AF367268_1 At1g29900/F1N18_6
[Arabidopsis thaliana] gi|22137066|gb|AAM91378.1|
At1g29900/F1N18_6 [Arabidopsis thaliana]
Length = 1187
Score = 233 bits (593), Expect(2) = 4e-62
Identities = 121/172 (70%), Positives = 142/172 (82%)
Frame = -1
Query: 752 VLSPEMRSTGEVMGIDPSYNIALAKAQMAAGQKLPLSGTVFLSLNEVTKPHLEKMAKAFT 573
+L PEMRSTGEVM I ++ A A AQ+AAGQKLPLSGTVFLSLN++TKPHLEK+A +F
Sbjct: 1011 ILGPEMRSTGEVMSISSEFSSAFAMAQIAAGQKLPLSGTVFLSLNDMTKPHLEKIAVSFL 1070
Query: 572 EIGFQIVATAGTALALKFVQIPAERVLKLHEGRPHAGDMIANGDIQLMVVTSSDDALDRI 393
E+GF+IVAT+GTA L+ IP ERVLKLHEGRPHA DM+ANG I LM++TSS DALD+
Sbjct: 1071 ELGFKIVATSGTAHFLELKGIPVERVLKLHEGRPHAADMVANGQIHLMLITSSGDALDQK 1130
Query: 392 DGLALRRMALDYKVPIVTTINGALATAEAIKSLKSHSIKMIALQDFFVDEVK 237
DG LR+MAL YKVP++TT+ GALATAE IKSLKS +IKM ALQDFF EVK
Sbjct: 1131 DGRQLRQMALAYKVPVITTVAGALATAEGIKSLKSSAIKMTALQDFF--EVK 1180
Score = 28.1 bits (61), Expect(2) = 4e-62
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 793 EAVLPFSKFPGCDV 752
EAV PF KF GCDV
Sbjct: 997 EAVFPFEKFQGCDV 1010
>emb|CAC85727.1| putative carbamoyl phosphate synthase large subunit [Nicotiana
tabacum]
Length = 1203
Score = 230 bits (587), Expect(2) = 7e-62
Identities = 116/167 (69%), Positives = 139/167 (82%)
Frame = -1
Query: 752 VLSPEMRSTGEVMGIDPSYNIALAKAQMAAGQKLPLSGTVFLSLNEVTKPHLEKMAKAFT 573
+L PEMRSTGEVMGI +IA AKAQ+AAGQK+PLSGT+FLSLNE+TKP L +A+AF
Sbjct: 1016 LLGPEMRSTGEVMGIHYESSIAFAKAQIAAGQKMPLSGTLFLSLNELTKPQLTTIARAFL 1075
Query: 572 EIGFQIVATAGTALALKFVQIPAERVLKLHEGRPHAGDMIANGDIQLMVVTSSDDALDRI 393
IGFQI+AT+GTA L+ +P ERVLK+HEGRPHA D+IANG IQLMV+TSS D LD+I
Sbjct: 1076 GIGFQIIATSGTARVLELEGMPVERVLKMHEGRPHAADLIANGQIQLMVITSSGDTLDQI 1135
Query: 392 DGLALRRMALDYKVPIVTTINGALATAEAIKSLKSHSIKMIALQDFF 252
DG LRRMAL YK+P++TT+ GALATA+AIKSLK + IKM ALQD+F
Sbjct: 1136 DGRKLRRMALAYKIPVITTVAGALATADAIKSLKCNKIKMTALQDYF 1182
Score = 29.6 bits (65), Expect(2) = 7e-62
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -2
Query: 793 EAVLPFSKFPGCDV 752
EAVLPF KF GCDV
Sbjct: 1002 EAVLPFEKFQGCDV 1015
>dbj|BAB90007.1| putative carbamoyl phosphate synthetase [Oryza sativa (japonica
cultivar-group)]
Length = 1092
Score = 217 bits (552), Expect(2) = 1e-57
Identities = 109/167 (65%), Positives = 137/167 (81%)
Frame = -1
Query: 752 VLSPEMRSTGEVMGIDPSYNIALAKAQMAAGQKLPLSGTVFLSLNEVTKPHLEKMAKAFT 573
+L PEMRSTGEVMGID ++ A AKAQ+AAGQKLPL+GTVFLSLN++TK HL ++ + F
Sbjct: 910 LLGPEMRSTGEVMGIDYEFSGAFAKAQIAAGQKLPLNGTVFLSLNDLTKRHLAEIGRGFR 969
Query: 572 EIGFQIVATAGTALALKFVQIPAERVLKLHEGRPHAGDMIANGDIQLMVVTSSDDALDRI 393
E+GF I+AT+GTA L+ IP E VLK+HEGRP+A DM+ NG IQ+MV+TSS DALD
Sbjct: 970 ELGFNIIATSGTAKVLQLEGIPVEPVLKIHEGRPNARDMLKNGQIQVMVITSSGDALDSK 1029
Query: 392 DGLALRRMALDYKVPIVTTINGALATAEAIKSLKSHSIKMIALQDFF 252
DGL LRR+AL YKVPI+TT++GA AT +AIKSLK+ SI+ +ALQD+F
Sbjct: 1030 DGLQLRRLALAYKVPIITTVDGARATIDAIKSLKNKSIETLALQDYF 1076
Score = 29.3 bits (64), Expect(2) = 1e-57
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2
Query: 793 EAVLPFSKFPGCDV 752
EAVLPF KF GCD+
Sbjct: 896 EAVLPFEKFQGCDI 909
>ref|ZP_00070947.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 1076
Score = 163 bits (413), Expect(2) = 3e-41
Identities = 85/174 (48%), Positives = 121/174 (68%)
Frame = -1
Query: 773 KVPRL*CVLSPEMRSTGEVMGIDPSYNIALAKAQMAAGQKLPLSGTVFLSLNEVTKPHLE 594
K P + VL PEMRSTGE MGID + A AKAQ++AGQKLPL GTVF+S+++ K +
Sbjct: 904 KFPGIDTVLGPEMRSTGEAMGIDVDFGKAFAKAQLSAGQKLPLEGTVFVSMSDRYKEAVV 963
Query: 593 KMAKAFTEIGFQIVATAGTALALKFVQIPAERVLKLHEGRPHAGDMIANGDIQLMVVTSS 414
+ K ++G ++VAT GT L+ + +LKLHEGRP+ D I NG+IQL+++ S
Sbjct: 964 PVVKDLVDLGLKVVATEGTRKILRLHDLEVGLMLKLHEGRPNVLDGIKNGEIQLIIIIPS 1023
Query: 413 DDALDRIDGLALRRMALDYKVPIVTTINGALATAEAIKSLKSHSIKMIALQDFF 252
D R DG+ +RR ALDYK+ ++TTI GA ATA AI++LKS ++++ A+QD++
Sbjct: 1024 GDEA-RADGIKIRRSALDYKITLITTIAGAKATAAAIRALKSGALEVKAIQDYY 1076
Score = 27.7 bits (60), Expect(2) = 3e-41
Identities = 11/13 (84%), Positives = 12/13 (91%)
Frame = -2
Query: 793 EAVLPFSKFPGCD 755
EAVLPF+KFPG D
Sbjct: 897 EAVLPFAKFPGID 909
>ref|NP_442333.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
[Synechocystis sp. PCC 6803] gi|7438086|pir||S76557
carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC
6.3.5.5) large chain [similarity] - Synechocystis sp.
(strain PCC 6803) gi|1001668|dbj|BAA10403.1|
carbamoyl-phosphate synthase, pyrimidine-specific, large
chain [Synechocystis sp. PCC 6803]
Length = 1105
Score = 150 bits (380), Expect(2) = 6e-38
Identities = 83/174 (47%), Positives = 114/174 (64%), Gaps = 1/174 (0%)
Frame = -1
Query: 773 KVPRL*CVLSPEMRSTGEVMGIDPSYNIALAKAQMAAGQKLPLSGTVFLSLNEVTKPHLE 594
K P +L PEMRSTGEVMGID + A AKA++ AG L +GTVF+S+++ TK
Sbjct: 931 KFPGADTLLGPEMRSTGEVMGIDSDFGKAFAKAELGAGVILATTGTVFVSMSDRTKEAAV 990
Query: 593 KMAKAFTEIGFQIVATAGTALALKFVQIP-AERVLKLHEGRPHAGDMIANGDIQLMVVTS 417
+ + ++GF++VAT+GT L+ I E VLKLHEGRPH D I NG IQ ++ T
Sbjct: 991 PVVRELIDLGFKVVATSGTQKVLREHGIEGVEVVLKLHEGRPHVIDWIKNGQIQFIINTP 1050
Query: 416 SDDALDRIDGLALRRMALDYKVPIVTTINGALATAEAIKSLKSHSIKMIALQDF 255
S + ++DG +RR ALDYK+PI+TTI G AT A++SL+ H + + ALQD+
Sbjct: 1051 SGEE-SQLDGRTIRRAALDYKLPIITTIAGGKATVAALRSLQDHPLDVKALQDY 1103
Score = 29.3 bits (64), Expect(2) = 6e-38
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -2
Query: 793 EAVLPFSKFPGCD 755
EAVLPFSKFPG D
Sbjct: 924 EAVLPFSKFPGAD 936
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 658,772,812
Number of Sequences: 1393205
Number of extensions: 13808636
Number of successful extensions: 34752
Number of sequences better than 10.0: 221
Number of HSP's better than 10.0 without gapping: 33311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34573
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40055936206
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
