Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001065A_C01 KMC001065A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51729 arginine-tRNA-protein transferase 1 [imported] - Ara... 32 5.9
pir||T27429 hypothetical protein Y79H2A.11 - Caenorhabditis elegans 32 5.9
ref|NP_196189.1| arginine-tRNA-protein transferase 1 homolog; pr... 32 5.9
ref|NP_499571.2| Doublecortin and Protein kinase domain containi... 32 5.9
gb|AAF67832.1|AF179267_1 endopeptidase PepO2 [Lactococcus lactis] 32 7.7
>pir||T51729 arginine-tRNA-protein transferase 1 [imported] - Arabidopsis
thaliana gi|3806098|gb|AAD12368.1| arginine-tRNA-protein
transferase 1; Ate1p [Arabidopsis thaliana]
Length = 629
Score = 32.0 bits (71), Expect = 5.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -3
Query: 583 KDGTVGMEQQLDKGCT--FTKRAECSDFVPSASTQSLNCEVSFFI*GLLD 440
+ GT + ++DK C +T R + SDFVP+ Q ++ + F+ G LD
Sbjct: 66 RSGTYLYKHEMDKTCCPPYTIRLKASDFVPTKEQQRVSRRLERFLDGKLD 115
>pir||T27429 hypothetical protein Y79H2A.11 - Caenorhabditis elegans
Length = 643
Score = 32.0 bits (71), Expect = 5.9
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 284 FSHDILKYYFHENTHSSELIWISQTNTTLQRSLTLTISQTSSF 412
FSH + + +FH + H ++ IS+ T R+ TL ++QTS F
Sbjct: 104 FSH-LPQQHFHHHIHHNQTAVISEETLTTPRASTLNLNQTSVF 145
>ref|NP_196189.1| arginine-tRNA-protein transferase 1 homolog; protein id:
At5g05700.1, supported by cDNA: gi_3806097 [Arabidopsis
thaliana] gi|13123999|sp|Q9ZT48|ATE1_ARATH
Arginine-tRNA-protein transferase 1 (R-transferase 1)
(Arginyltransferase 1) (Arginyl-tRNA--protein
transferase 1) gi|9759095|dbj|BAB09664.1|
arginine-tRNA-protein transferase 1 homolog [Arabidopsis
thaliana]
Length = 632
Score = 32.0 bits (71), Expect = 5.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -3
Query: 583 KDGTVGMEQQLDKGCT--FTKRAECSDFVPSASTQSLNCEVSFFI*GLLD 440
+ GT + ++DK C +T R + SDFVP+ Q ++ + F+ G LD
Sbjct: 66 RSGTYLYKHEMDKTCCPPYTIRLKASDFVPTKEQQRVSRRLERFLDGKLD 115
>ref|NP_499571.2| Doublecortin and Protein kinase domain containing protein, ZYGote
defective : embryonic lethal ZYG-8 (90.0 kD) (zyg-8)
[Caenorhabditis elegans] gi|15485230|emb|CAC67459.1|
ZYG-8 protein [Caenorhabditis elegans]
gi|21615514|emb|CAD36501.1| C. elegans ZYG-8 protein
(corresponding sequence Y79H2A.11) [Caenorhabditis
elegans] gi|21615521|emb|CAB54507.2| C. elegans ZYG-8
protein (corresponding sequence Y79H2A.11)
[Caenorhabditis elegans]
Length = 802
Score = 32.0 bits (71), Expect = 5.9
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 284 FSHDILKYYFHENTHSSELIWISQTNTTLQRSLTLTISQTSSF 412
FSH + + +FH + H ++ IS+ T R+ TL ++QTS F
Sbjct: 104 FSH-LPQQHFHHHIHHNQTAVISEETLTTPRASTLNLNQTSVF 145
>gb|AAF67832.1|AF179267_1 endopeptidase PepO2 [Lactococcus lactis]
Length = 627
Score = 31.6 bits (70), Expect = 7.7
Identities = 15/48 (31%), Positives = 24/48 (49%)
Frame = +1
Query: 301 EILFP*KYPLFRTDLDQPNKHHPAKIPDSHYLPDFEFFSLPSTTVSNP 444
EIL + F D+D+ N H PA + +++Y PD P+ + P
Sbjct: 407 EILTARTFEKFSEDVDKTNLHMPAHMVNAYYSPDSNTIVFPAAILQAP 454
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,921,665
Number of Sequences: 1393205
Number of extensions: 10012808
Number of successful extensions: 24216
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 23644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24201
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
