Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001062A_C01 KMC001062A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42570.1| putative receptor protein kinase [Arabidopsis th... 96 2e-19
gb|AAF19706.1|AC008047_13 F2K11.19 [Arabidopsis thaliana] 96 2e-19
ref|NP_176532.1| leucine-rich repeat transmembrane protein kinas... 96 2e-19
ref|NP_198934.1| leucine-rich repeat transmembrane protein kinas... 85 5e-16
gb|AAO59488.1| ser-thr protein kinase [Gossypium hirsutum] 62 5e-09
>dbj|BAC42570.1| putative receptor protein kinase [Arabidopsis thaliana]
Length = 664
Score = 96.3 bits (238), Expect = 2e-19
Identities = 48/82 (58%), Positives = 60/82 (72%), Gaps = 6/82 (7%)
Frame = -3
Query: 493 YLEMPEVMSHLVDPELKNFKHDDLKVICEVVSLCINPDAT------ARPSMRELCSMLES 332
+LE PE MS LVDPELK+F +DL+ +CEV S C+N D T +PS++ELC LES
Sbjct: 581 FLEAPEAMSGLVDPELKHFNQEDLETVCEVASQCLNRDPTNNNNNHNKPSVQELCETLES 640
Query: 331 RIDTSVSVDLKSSSLAWAELAL 266
RI S+S +L+SSSLAWAELAL
Sbjct: 641 RISLSISAELRSSSLAWAELAL 662
>gb|AAF19706.1|AC008047_13 F2K11.19 [Arabidopsis thaliana]
Length = 705
Score = 96.3 bits (238), Expect = 2e-19
Identities = 48/82 (58%), Positives = 60/82 (72%), Gaps = 6/82 (7%)
Frame = -3
Query: 493 YLEMPEVMSHLVDPELKNFKHDDLKVICEVVSLCINPDAT------ARPSMRELCSMLES 332
+LE PE MS LVDPELK+F +DL+ +CEV S C+N D T +PS++ELC LES
Sbjct: 622 FLEAPEAMSGLVDPELKHFNQEDLETVCEVASQCLNRDPTNNNNNHNKPSVQELCETLES 681
Query: 331 RIDTSVSVDLKSSSLAWAELAL 266
RI S+S +L+SSSLAWAELAL
Sbjct: 682 RISLSISAELRSSSLAWAELAL 703
>ref|NP_176532.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g63430.1 [Arabidopsis thaliana]
Length = 685
Score = 96.3 bits (238), Expect = 2e-19
Identities = 48/82 (58%), Positives = 60/82 (72%), Gaps = 6/82 (7%)
Frame = -3
Query: 493 YLEMPEVMSHLVDPELKNFKHDDLKVICEVVSLCINPDAT------ARPSMRELCSMLES 332
+LE PE MS LVDPELK+F +DL+ +CEV S C+N D T +PS++ELC LES
Sbjct: 602 FLEAPEAMSGLVDPELKHFNQEDLETVCEVASQCLNRDPTNNNNNHNKPSVQELCETLES 661
Query: 331 RIDTSVSVDLKSSSLAWAELAL 266
RI S+S +L+SSSLAWAELAL
Sbjct: 662 RISLSISAELRSSSLAWAELAL 683
>ref|NP_198934.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g41180.1 [Arabidopsis thaliana]
gi|9759164|dbj|BAB09720.1| receptor kinase-like protein
[Arabidopsis thaliana]
Length = 664
Score = 84.7 bits (208), Expect = 5e-16
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 6/83 (7%)
Frame = -3
Query: 490 LEMPEVMSHLVDPELKNFKHDDLKVICEVVSLCINPDATARP------SMRELCSMLESR 329
L P+VM+ LVDPELK+FK +L+ +CEV S C+N D + S++ LC LESR
Sbjct: 571 LGAPDVMASLVDPELKHFKQKELEAVCEVASQCLNLDQNEKDKDKLSCSIQALCETLESR 630
Query: 328 IDTSVSVDLKSSSLAWAELALLS 260
I S+S + KSSSLAWAELAL S
Sbjct: 631 ITVSISAEFKSSSLAWAELALAS 653
>gb|AAO59488.1| ser-thr protein kinase [Gossypium hirsutum]
Length = 328
Score = 61.6 bits (148), Expect = 5e-09
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Frame = -3
Query: 493 YLEMPEVMSHLVDPELKNFKHDDLKVICEVVSLCINPDATARPSMRELCSMLESRIDTSV 314
YL+ + + +VDP LK F+ DDL+ + EVV C+NPD RP+MRE+ + L+ T++
Sbjct: 246 YLKRDQPLKEMVDPTLKFFQGDDLEKLFEVVKTCVNPDPKERPTMREVAAKLKE--ITAM 303
Query: 313 SVD---LKSSSLAWAELALLS 260
D K S L WAEL +LS
Sbjct: 304 GPDGATPKLSPLWWAELEILS 324
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 372,713,621
Number of Sequences: 1393205
Number of extensions: 7242760
Number of successful extensions: 21133
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 20466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21123
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
