Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001060A_C01 KMC001060A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD10991.1| envelope glycoprotein [Human immunodeficiency vir... 32 2.9
gb|AAF13343.1| envelope glycoprotein [Human immunodeficiency vir... 32 4.9
dbj|BAC03389.1| FLJ00299 protein [Homo sapiens] 32 4.9
ref|NP_066522.1| ribosomal protein S3 [Naegleria gruberi] gi|104... 31 8.3
>gb|AAD10991.1| envelope glycoprotein [Human immunodeficiency virus type 1]
Length = 92
Score = 32.3 bits (72), Expect = 2.9
Identities = 11/28 (39%), Positives = 21/28 (74%)
Frame = -2
Query: 180 IAIRCTSLQKNVKNISNLSNTKGEVIAE 97
+++ CT L+KN KN +N +++ GE++ E
Sbjct: 7 VSLNCTDLKKNTKNTTNTTSSSGEMMRE 34
>gb|AAF13343.1| envelope glycoprotein [Human immunodeficiency virus type 1]
Length = 425
Score = 31.6 bits (70), Expect = 4.9
Identities = 11/26 (42%), Positives = 18/26 (68%)
Frame = -2
Query: 180 IAIRCTSLQKNVKNISNLSNTKGEVI 103
+ ++CT LQKNV N +N + T G ++
Sbjct: 21 VTLKCTDLQKNVTNTTNTNTTNGGIL 46
>dbj|BAC03389.1| FLJ00299 protein [Homo sapiens]
Length = 72
Score = 31.6 bits (70), Expect = 4.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 112 PFCIGQIRYILHIFLQRSTSNCNLCPS 192
P+C G + Y+ H +L S +C LCP+
Sbjct: 35 PYCPGHLLYLAHSYLPCSPESCLLCPA 61
>ref|NP_066522.1| ribosomal protein S3 [Naegleria gruberi]
gi|10444234|gb|AAG17800.1|AF288092_25 ribosomal protein
S3 [Naegleria gruberi]
Length = 523
Score = 30.8 bits (68), Expect = 8.3
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -2
Query: 159 LQKNVKNISNL----SNTKGEVIAETFVCILRKVCYF*FXSCNNLLLLETWAEKVQ 4
L+KN+ +S+ +N K + +F+CIL+ + YF F NN L ++ ++
Sbjct: 181 LKKNLTMLSSFFIARTNNKNLLKHYSFICILKNIIYFLFNIKNNYFFLRSFLHYIE 236
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 341,194,235
Number of Sequences: 1393205
Number of extensions: 6129626
Number of successful extensions: 11343
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11342
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
