Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001057A_C04 KMC001057A_c04
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99788|CML1_HUMAN Chemokine receptor-like 1 (G-protein couple... 34 1.8
gb|AAC51258.1| orphan G-protein coupled receptor Dez isoform a [... 34 1.8
ref|NP_004063.1| chemokine-like receptor 1 [Homo sapiens] gi|173... 34 1.8
gb|ZP_00022989.1| hypothetical protein [Ralstonia metallidurans] 33 4.0
emb|CAC84472.1| ATPase3 [Heliotis virescens ascovirus 3c] 32 5.2
>sp|Q99788|CML1_HUMAN Chemokine receptor-like 1 (G-protein coupled receptor DEZ) (G
protein-coupled receptor ChemR23)
Length = 373
Score = 33.9 bits (76), Expect = 1.8
Identities = 17/45 (37%), Positives = 25/45 (54%)
Frame = -1
Query: 374 IKTPGSSFWDTNLRSPPGGYEAILRTG*LVVSVSWCCGFVVP*II 240
+ TPGSS W T+ + P GY + +V + CGF+VP +I
Sbjct: 195 LSTPGSSSWPTHSQMDPVGYSRHM----VVTVTRFLCGFLVPVLI 235
>gb|AAC51258.1| orphan G-protein coupled receptor Dez isoform a [Homo sapiens]
Length = 373
Score = 33.9 bits (76), Expect = 1.8
Identities = 17/45 (37%), Positives = 25/45 (54%)
Frame = -1
Query: 374 IKTPGSSFWDTNLRSPPGGYEAILRTG*LVVSVSWCCGFVVP*II 240
+ TPGSS W T+ + P GY + +V + CGF+VP +I
Sbjct: 195 LSTPGSSSWPTHSQMDPVGYSRHM----VVTVTRFLCGFLVPVLI 235
>ref|NP_004063.1| chemokine-like receptor 1 [Homo sapiens] gi|1732345|gb|AAC51259.1|
orphan G-protein coupled receptor Dez isoform b [Homo
sapiens] gi|3219598|emb|CAA75112.1| orphan G
protein-coupled receptor ChemR23 [Homo sapiens]
gi|21929007|dbj|BAC06089.1| seven transmembrane helix
receptor [Homo sapiens]
Length = 371
Score = 33.9 bits (76), Expect = 1.8
Identities = 17/45 (37%), Positives = 25/45 (54%)
Frame = -1
Query: 374 IKTPGSSFWDTNLRSPPGGYEAILRTG*LVVSVSWCCGFVVP*II 240
+ TPGSS W T+ + P GY + +V + CGF+VP +I
Sbjct: 193 LSTPGSSSWPTHSQMDPVGYSRHM----VVTVTRFLCGFLVPVLI 233
>gb|ZP_00022989.1| hypothetical protein [Ralstonia metallidurans]
Length = 342
Score = 32.7 bits (73), Expect = 4.0
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 274 ETETTSQPVRRIASYPPGGDLRLVSQKLEPGVLMGPSDVV 393
E + +P+ + +PPGG + +V+++L+PG+ G V
Sbjct: 43 EPASGGRPISMVLPFPPGGSVDIVARQLQPGLKSGLGQTV 82
>emb|CAC84472.1| ATPase3 [Heliotis virescens ascovirus 3c]
Length = 229
Score = 32.3 bits (72), Expect = 5.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 581 YFKMLLMLGFLYSLNIFLF**NCLDGLFMMSLCIH 477
++KML M+G Y ++ L CLDG+F+ C H
Sbjct: 101 HYKMLYMVGVQYPKDLPLTLRTCLDGIFLFGTCNH 135
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,318,368
Number of Sequences: 1393205
Number of extensions: 11981131
Number of successful extensions: 30381
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 28763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30312
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
