Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001056A_C01 KMC001056A_c01
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_002213.1| inositol 1,4,5-triphosphate receptor, type 1 [H... 35 0.77
pir||B36579 inositol 1,4,5-triphosphate receptor 2 - rat gi|2046... 35 0.77
sp|P20943|PCP1_MOUSE PURKINJE CELL PROTEIN 1 (PROTEIN PCD-6) 35 0.77
gb|AAA88319.1| putative gi|13096949|gb|AAH03271.1| Purkinje cell... 35 0.77
dbj|BAC32085.1| unnamed protein product [Mus musculus] 35 0.77
>ref|NP_002213.1| inositol 1,4,5-triphosphate receptor, type 1 [Homo sapiens]
gi|1085408|pir||S54974 type 1 inositol
1,4,5-trisphosphate receptor - human
gi|559323|dbj|BAA05065.1| human type 1 inositol
1,4,5-trisphosphate receptor [Homo sapiens]
Length = 2695
Score = 35.0 bits (79), Expect = 0.77
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 22/96 (22%)
Frame = +3
Query: 228 KTINLSSHF*VKTNEWFYIIFL-------SSFTTSPEQFISSLVLLKGLD**RVWIHFSL 386
KT+ H + N W Y+ F+ S+ T PE +++ ++ + LD SL
Sbjct: 2569 KTVTFEEHIKEEHNMWHYLCFIVLVKVKDSTEYTGPESYVAEMIKERNLDWFPRMRAMSL 2628
Query: 387 ISINSE---------------TQKILTEVSTQLQEL 449
+S +SE T K++T +S QL EL
Sbjct: 2629 VSSDSEGEQNELRNLQEKLESTMKLVTNLSGQLSEL 2664
>pir||B36579 inositol 1,4,5-triphosphate receptor 2 - rat gi|204674|gb|AAA41357.1|
inositol-1,4,5-triphosphate receptor
Length = 2734
Score = 35.0 bits (79), Expect = 0.77
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 22/96 (22%)
Frame = +3
Query: 228 KTINLSSHF*VKTNEWFYIIFL-------SSFTTSPEQFISSLVLLKGLD**RVWIHFSL 386
KT+ H + N W Y+ F+ S+ T PE +++ ++ + LD SL
Sbjct: 2608 KTVTFEEHIKEEHNMWHYLCFIVLVKVKDSTEYTGPESYVAEMIRERNLDWFPRMRAMSL 2667
Query: 387 ISINSE---------------TQKILTEVSTQLQEL 449
+S +SE T K++T +S QL EL
Sbjct: 2668 VSSDSEGEQNELRNLQEKLESTMKLVTNLSGQLSEL 2703
>sp|P20943|PCP1_MOUSE PURKINJE CELL PROTEIN 1 (PROTEIN PCD-6)
Length = 500
Score = 35.0 bits (79), Expect = 0.77
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 22/96 (22%)
Frame = +3
Query: 228 KTINLSSHF*VKTNEWFYIIFL-------SSFTTSPEQFISSLVLLKGLD**RVWIHFSL 386
KT+ H + N W Y+ F+ S+ T PE +++ ++ + LD SL
Sbjct: 374 KTVTFEEHIKEEHNMWHYLCFIVLVKVKDSTEYTGPESYVAEMIRERNLDWFPRMRAMSL 433
Query: 387 ISINSE---------------TQKILTEVSTQLQEL 449
+S +SE T K++T +S QL EL
Sbjct: 434 VSSDSEGEQNELRNLQEKLESTMKLVTNLSGQLSEL 469
>gb|AAA88319.1| putative gi|13096949|gb|AAH03271.1| Purkinje cell protein 1 [Mus
musculus]
Length = 497
Score = 35.0 bits (79), Expect = 0.77
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 22/96 (22%)
Frame = +3
Query: 228 KTINLSSHF*VKTNEWFYIIFL-------SSFTTSPEQFISSLVLLKGLD**RVWIHFSL 386
KT+ H + N W Y+ F+ S+ T PE +++ ++ + LD SL
Sbjct: 371 KTVTFEEHIKEEHNMWHYLCFIVLVKVKDSTEYTGPESYVAEMIRERNLDWFPRMRAMSL 430
Query: 387 ISINSE---------------TQKILTEVSTQLQEL 449
+S +SE T K++T +S QL EL
Sbjct: 431 VSSDSEGEQNELRNLQEKLESTMKLVTNLSGQLSEL 466
>dbj|BAC32085.1| unnamed protein product [Mus musculus]
Length = 463
Score = 35.0 bits (79), Expect = 0.77
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 22/96 (22%)
Frame = +3
Query: 228 KTINLSSHF*VKTNEWFYIIFL-------SSFTTSPEQFISSLVLLKGLD**RVWIHFSL 386
KT+ H + N W Y+ F+ S+ T PE +++ ++ + LD SL
Sbjct: 337 KTVTFEEHIKEEHNMWHYLCFIVLVKVKDSTEYTGPESYVAEMIRERNLDWFPRMRAMSL 396
Query: 387 ISINSE---------------TQKILTEVSTQLQEL 449
+S +SE T K++T +S QL EL
Sbjct: 397 VSSDSEGEQNELRNLQEKLESTMKLVTNLSGQLSEL 432
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,189,230
Number of Sequences: 1393205
Number of extensions: 9795185
Number of successful extensions: 20284
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20276
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
