Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001052A_C02 KMC001052A_c02
(675 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK96781.1| Unknown protein [Arabidopsis thaliana] 208 5e-53
gb|AAN72034.1| isp4 like protein [Arabidopsis thaliana] 208 5e-53
gb|AAO32313.1| putative oligopeptide transporter protein [Oryza ... 197 8e-50
ref|NP_172464.1| unknown protein; protein id: At1g09930.1 [Arabi... 147 1e-34
gb|AAM64614.1| Isp4-like protein [Arabidopsis thaliana] 137 1e-31
>gb|AAK96781.1| Unknown protein [Arabidopsis thaliana]
Length = 737
Score = 208 bits (530), Expect = 5e-53
Identities = 93/106 (87%), Positives = 99/106 (92%)
Frame = -3
Query: 673 LINIPVISYGFAGMPPATPSNIASWLVTGMIFNFFVFRYHQRWWQKYNYVLSAALDAGTA 494
LINIPVISYGFAGMPPATP+NIASWLVTG IFN+FVF YH+RWWQKYNYVLSAALDAGTA
Sbjct: 632 LINIPVISYGFAGMPPATPTNIASWLVTGTIFNYFVFNYHKRWWQKYNYVLSAALDAGTA 691
Query: 493 FMGVLIFFALPNAGHSLKWWGSEMDHSPLASCPTAPGIKVDGCPVF 356
FMGVL+FFAL NAGH LKWWG+E+DH PLASCPTAPGIK GCPVF
Sbjct: 692 FMGVLLFFALQNAGHDLKWWGTEVDHCPLASCPTAPGIKAKGCPVF 737
>gb|AAN72034.1| isp4 like protein [Arabidopsis thaliana]
Length = 737
Score = 208 bits (530), Expect = 5e-53
Identities = 93/106 (87%), Positives = 99/106 (92%)
Frame = -3
Query: 673 LINIPVISYGFAGMPPATPSNIASWLVTGMIFNFFVFRYHQRWWQKYNYVLSAALDAGTA 494
LINIPVISYGFAGMPPATP+NIASWLVTG IFN+FVF YH+RWWQKYNYVLSAALDAGTA
Sbjct: 632 LINIPVISYGFAGMPPATPTNIASWLVTGTIFNYFVFNYHKRWWQKYNYVLSAALDAGTA 691
Query: 493 FMGVLIFFALPNAGHSLKWWGSEMDHSPLASCPTAPGIKVDGCPVF 356
FMGVL+FFAL NAGH LKWWG+E+DH PLASCPTAPGIK GCPVF
Sbjct: 692 FMGVLLFFALQNAGHDLKWWGTEVDHCPLASCPTAPGIKAKGCPVF 737
>gb|AAO32313.1| putative oligopeptide transporter protein [Oryza sativa (japonica
cultivar-group)]
Length = 726
Score = 197 bits (502), Expect = 8e-50
Identities = 89/106 (83%), Positives = 96/106 (89%)
Frame = -3
Query: 673 LINIPVISYGFAGMPPATPSNIASWLVTGMIFNFFVFRYHQRWWQKYNYVLSAALDAGTA 494
LIN+PVISYGFAGMPPATP+NIASWLVTG IFN+FVF+Y + WWQKYNYVLSAALDAGTA
Sbjct: 621 LINVPVISYGFAGMPPATPTNIASWLVTGTIFNYFVFKYRKGWWQKYNYVLSAALDAGTA 680
Query: 493 FMGVLIFFALPNAGHSLKWWGSEMDHSPLASCPTAPGIKVDGCPVF 356
FMGVLIFFAL NA H LKWWG+ +DH PLASCPTAPGI V GCPVF
Sbjct: 681 FMGVLIFFALQNAHHELKWWGTAVDHCPLASCPTAPGIAVKGCPVF 726
>ref|NP_172464.1| unknown protein; protein id: At1g09930.1 [Arabidopsis thaliana]
Length = 734
Score = 147 bits (371), Expect = 1e-34
Identities = 65/106 (61%), Positives = 84/106 (78%), Gaps = 1/106 (0%)
Frame = -3
Query: 670 INIPVISYGFAGMPPATPSNIASWLVTGMIFNFFVFRYHQRWWQKYNYVLSAALDAGTAF 491
IN+PV+ A MPPAT N W++ G+IFN+FVF+Y ++WWQ+YNYVLSAALDAG AF
Sbjct: 629 INLPVLLGATAAMPPATSVNFNCWIIVGVIFNYFVFKYCKKWWQRYNYVLSAALDAGLAF 688
Query: 490 MGVLIFFALPNAGHSLK-WWGSEMDHSPLASCPTAPGIKVDGCPVF 356
MGVL++F+L G S+ WWG++ ++ PLASCPTAPG+ VDGCPVF
Sbjct: 689 MGVLLYFSLTMNGISINHWWGAKGENCPLASCPTAPGVLVDGCPVF 734
>gb|AAM64614.1| Isp4-like protein [Arabidopsis thaliana]
Length = 729
Score = 137 bits (346), Expect = 1e-31
Identities = 61/105 (58%), Positives = 76/105 (72%)
Frame = -3
Query: 673 LINIPVISYGFAGMPPATPSNIASWLVTGMIFNFFVFRYHQRWWQKYNYVLSAALDAGTA 494
L+N+PV+ A MPPAT N SW++ G IFN FVFRY + WWQ+YNYVLSAA+DAG A
Sbjct: 624 LVNLPVLLGATAMMPPATAVNYNSWILVGTIFNLFVFRYRKSWWQRYNYVLSAAMDAGVA 683
Query: 493 FMGVLIFFALPNAGHSLKWWGSEMDHSPLASCPTAPGIKVDGCPV 359
FM VL++F++ SL WWG+ +H LA CPTA G+ VDGCPV
Sbjct: 684 FMAVLLYFSVGMEEKSLDWWGTRGEHCDLAKCPTARGVIVDGCPV 728
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 640,187,504
Number of Sequences: 1393205
Number of extensions: 14680733
Number of successful extensions: 33021
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 31939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32996
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
